INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bealign -q -r ./rsrc/ref.fasta -m HIV_BETWEEN_F -R rsrc/papers/32500089/sequence.fasta /tmp/hivtrace-eom2d22r/sequence.fasta_output.bam INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bam2msa /tmp/hivtrace-eom2d22r/sequence.fasta_output.bam /tmp/hivtrace-eom2d22r/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 2, "msg": ""} DEBUG:root:tn93 -q -0 -o /tmp/hivtrace-eom2d22r/sequence.fasta_user.tn93output.csv -t 0.015 -a resolve -l 500 -g .05 -f csv /tmp/hivtrace-eom2d22r/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/hivnetworkcsv -i /tmp/hivtrace-eom2d22r/sequence.fasta_user.tn93output.csv -t 0.015 -f plain -J -q -n remove -s /tmp/hivtrace-eom2d22r/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\nFiltering a set of 63713 edges (66/66 clusters). Pass 2, 98304 triangles, 115 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\nFiltering a set of 63713 edges (66/66 clusters). Pass 2, 98304 triangles, 115 filtered edges\nFiltering a set of 63598 edges (66/66 clusters). Pass 3, 131072 triangles, 122 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\nFiltering a set of 63713 edges (66/66 clusters). Pass 2, 98304 triangles, 115 filtered edges\nFiltering a set of 63598 edges (66/66 clusters). Pass 3, 131072 triangles, 122 filtered edges\nFiltering a set of 63476 edges (66/66 clusters). Pass 4, 163840 triangles, 364 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\nFiltering a set of 63713 edges (66/66 clusters). Pass 2, 98304 triangles, 115 filtered edges\nFiltering a set of 63598 edges (66/66 clusters). Pass 3, 131072 triangles, 122 filtered edges\nFiltering a set of 63476 edges (66/66 clusters). Pass 4, 163840 triangles, 364 filtered edges\nFiltering a set of 63112 edges (66/66 clusters). Pass 5, 196608 triangles, 239 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\nFiltering a set of 63713 edges (66/66 clusters). Pass 2, 98304 triangles, 115 filtered edges\nFiltering a set of 63598 edges (66/66 clusters). Pass 3, 131072 triangles, 122 filtered edges\nFiltering a set of 63476 edges (66/66 clusters). Pass 4, 163840 triangles, 364 filtered edges\nFiltering a set of 63112 edges (66/66 clusters). Pass 5, 196608 triangles, 239 filtered edges\nFiltering a set of 62873 edges (66/66 clusters). Pass 6, 229376 triangles, 640 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\nFiltering a set of 63713 edges (66/66 clusters). Pass 2, 98304 triangles, 115 filtered edges\nFiltering a set of 63598 edges (66/66 clusters). Pass 3, 131072 triangles, 122 filtered edges\nFiltering a set of 63476 edges (66/66 clusters). Pass 4, 163840 triangles, 364 filtered edges\nFiltering a set of 63112 edges (66/66 clusters). Pass 5, 196608 triangles, 239 filtered edges\nFiltering a set of 62873 edges (66/66 clusters). Pass 6, 229376 triangles, 640 filtered edges\nFiltering a set of 62233 edges (66/66 clusters). Pass 7, 262144 triangles, 337 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\nFiltering a set of 63713 edges (66/66 clusters). Pass 2, 98304 triangles, 115 filtered edges\nFiltering a set of 63598 edges (66/66 clusters). Pass 3, 131072 triangles, 122 filtered edges\nFiltering a set of 63476 edges (66/66 clusters). Pass 4, 163840 triangles, 364 filtered edges\nFiltering a set of 63112 edges (66/66 clusters). Pass 5, 196608 triangles, 239 filtered edges\nFiltering a set of 62873 edges (66/66 clusters). Pass 6, 229376 triangles, 640 filtered edges\nFiltering a set of 62233 edges (66/66 clusters). Pass 7, 262144 triangles, 337 filtered edges\nEdge filtering identified 9022 edges for removal\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\nFiltering a set of 63713 edges (66/66 clusters). Pass 2, 98304 triangles, 115 filtered edges\nFiltering a set of 63598 edges (66/66 clusters). Pass 3, 131072 triangles, 122 filtered edges\nFiltering a set of 63476 edges (66/66 clusters). Pass 4, 163840 triangles, 364 filtered edges\nFiltering a set of 63112 edges (66/66 clusters). Pass 5, 196608 triangles, 239 filtered edges\nFiltering a set of 62873 edges (66/66 clusters). Pass 6, 229376 triangles, 640 filtered edges\nFiltering a set of 62233 edges (66/66 clusters). Pass 7, 262144 triangles, 337 filtered edges\nEdge filtering identified 9022 edges for removal\nEdge filtering removed 9022 edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\nFiltering a set of 63713 edges (66/66 clusters). Pass 2, 98304 triangles, 115 filtered edges\nFiltering a set of 63598 edges (66/66 clusters). Pass 3, 131072 triangles, 122 filtered edges\nFiltering a set of 63476 edges (66/66 clusters). Pass 4, 163840 triangles, 364 filtered edges\nFiltering a set of 63112 edges (66/66 clusters). Pass 5, 196608 triangles, 239 filtered edges\nFiltering a set of 62873 edges (66/66 clusters). Pass 6, 229376 triangles, 640 filtered edges\nFiltering a set of 62233 edges (66/66 clusters). Pass 7, 262144 triangles, 337 filtered edges\nEdge filtering identified 9022 edges for removal\nEdge filtering removed 9022 edges\nFitting the degree distribution to various densities\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 3, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 181 filtered edges\nFiltering a set of 17689 edges (65/66 clusters). Pass 1, 65536 triangles, 434 filtered edges\nFiltering a set of 17255 edges (65/66 clusters). Pass 2, 98304 triangles, 890 filtered edges\nFiltering a set of 16365 edges (65/66 clusters). Pass 3, 131072 triangles, 1785 filtered edges\nFiltering a set of 14580 edges (65/66 clusters). Pass 4, 163840 triangles, 1163 filtered edges\nFiltering a set of 13417 edges (65/66 clusters). Pass 5, 143939 triangles, 1608 filtered edges\nFiltering a set of 11809 edges (65/66 clusters). Pass 6, 5305 triangles, 70 filtered edges\nFiltering a set of 11739 edges (65/66 clusters). Pass 7, 5037 triangles, 25 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 144 filtered edges\nFiltering a set of 63767 edges (66/66 clusters). Pass 1, 65536 triangles, 54 filtered edges\nFiltering a set of 63713 edges (66/66 clusters). Pass 2, 98304 triangles, 115 filtered edges\nFiltering a set of 63598 edges (66/66 clusters). Pass 3, 131072 triangles, 122 filtered edges\nFiltering a set of 63476 edges (66/66 clusters). Pass 4, 163840 triangles, 364 filtered edges\nFiltering a set of 63112 edges (66/66 clusters). Pass 5, 196608 triangles, 239 filtered edges\nFiltering a set of 62873 edges (66/66 clusters). Pass 6, 229376 triangles, 640 filtered edges\nFiltering a set of 62233 edges (66/66 clusters). Pass 7, 262144 triangles, 337 filtered edges\nEdge filtering identified 9022 edges for removal\nEdge filtering removed 9022 edges\nFitting the degree distribution to various densities\n"}