INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bealign -q -r ./rsrc/ref.fasta -m HIV_BETWEEN_F -R rsrc/papers/32500089/sequence.fasta /tmp/hivtrace-t24_tlhd/sequence.fasta_output.bam INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bam2msa /tmp/hivtrace-t24_tlhd/sequence.fasta_output.bam /tmp/hivtrace-t24_tlhd/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 2, "msg": ""} DEBUG:root:tn93 -q -0 -o /tmp/hivtrace-t24_tlhd/sequence.fasta_user.tn93output.csv -t 0.015 -a resolve -l 500 -g .05 -f csv /tmp/hivtrace-t24_tlhd/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/hivnetworkcsv -i /tmp/hivtrace-t24_tlhd/sequence.fasta_user.tn93output.csv -t 0.015 -f plain -J -q -n remove -s /tmp/hivtrace-t24_tlhd/sequence.fasta_output.fasta -l --cycle-report-file data/hivtrace/32500089_nodes.cycle_report.default.json INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\nFiltering a set of 62190 edges (66/66 clusters). Pass 6, 229376 triangles, 406 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\nFiltering a set of 62190 edges (66/66 clusters). Pass 6, 229376 triangles, 406 filtered edges\nFiltering a set of 61784 edges (66/66 clusters). Pass 7, 262144 triangles, 1048 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\nFiltering a set of 62190 edges (66/66 clusters). Pass 6, 229376 triangles, 406 filtered edges\nFiltering a set of 61784 edges (66/66 clusters). Pass 7, 262144 triangles, 1048 filtered edges\n4-cycle filtering a set of 60736 edges (66/66 clusters). Pass 0, 33028 4-cycles, 8 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\nFiltering a set of 62190 edges (66/66 clusters). Pass 6, 229376 triangles, 406 filtered edges\nFiltering a set of 61784 edges (66/66 clusters). Pass 7, 262144 triangles, 1048 filtered edges\n4-cycle filtering a set of 60736 edges (66/66 clusters). Pass 0, 33028 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60728 edges (66/66 clusters). Pass 1, 65735 4-cycles, 8 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\nFiltering a set of 62190 edges (66/66 clusters). Pass 6, 229376 triangles, 406 filtered edges\nFiltering a set of 61784 edges (66/66 clusters). Pass 7, 262144 triangles, 1048 filtered edges\n4-cycle filtering a set of 60736 edges (66/66 clusters). Pass 0, 33028 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60728 edges (66/66 clusters). Pass 1, 65735 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60720 edges (66/66 clusters). Pass 2, 98433 4-cycles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\nFiltering a set of 62190 edges (66/66 clusters). Pass 6, 229376 triangles, 406 filtered edges\nFiltering a set of 61784 edges (66/66 clusters). Pass 7, 262144 triangles, 1048 filtered edges\n4-cycle filtering a set of 60736 edges (66/66 clusters). Pass 0, 33028 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60728 edges (66/66 clusters). Pass 1, 65735 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60720 edges (66/66 clusters). Pass 2, 98433 4-cycles, 1 filtered edges\n4-cycle filtering a set of 60719 edges (66/66 clusters). Pass 3, 131134 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\nFiltering a set of 62190 edges (66/66 clusters). Pass 6, 229376 triangles, 406 filtered edges\nFiltering a set of 61784 edges (66/66 clusters). Pass 7, 262144 triangles, 1048 filtered edges\n4-cycle filtering a set of 60736 edges (66/66 clusters). Pass 0, 33028 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60728 edges (66/66 clusters). Pass 1, 65735 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60720 edges (66/66 clusters). Pass 2, 98433 4-cycles, 1 filtered edges\n4-cycle filtering a set of 60719 edges (66/66 clusters). Pass 3, 131134 4-cycles, 0 filtered edges\nEdge filtering identified 10249 edges for removal\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\nFiltering a set of 62190 edges (66/66 clusters). Pass 6, 229376 triangles, 406 filtered edges\nFiltering a set of 61784 edges (66/66 clusters). Pass 7, 262144 triangles, 1048 filtered edges\n4-cycle filtering a set of 60736 edges (66/66 clusters). Pass 0, 33028 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60728 edges (66/66 clusters). Pass 1, 65735 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60720 edges (66/66 clusters). Pass 2, 98433 4-cycles, 1 filtered edges\n4-cycle filtering a set of 60719 edges (66/66 clusters). Pass 3, 131134 4-cycles, 0 filtered edges\nEdge filtering identified 10249 edges for removal\nEdge filtering removed 10249 edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\nFiltering a set of 62190 edges (66/66 clusters). Pass 6, 229376 triangles, 406 filtered edges\nFiltering a set of 61784 edges (66/66 clusters). Pass 7, 262144 triangles, 1048 filtered edges\n4-cycle filtering a set of 60736 edges (66/66 clusters). Pass 0, 33028 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60728 edges (66/66 clusters). Pass 1, 65735 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60720 edges (66/66 clusters). Pass 2, 98433 4-cycles, 1 filtered edges\n4-cycle filtering a set of 60719 edges (66/66 clusters). Pass 3, 131134 4-cycles, 0 filtered edges\nEdge filtering identified 10249 edges for removal\nEdge filtering removed 10249 edges\nFitting the degree distribution to various densities\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 3, "msg": "Running edge filtering on 66 clusters with 3 or more edges\n\nFiltering a set of 894 edges (59/66 clusters) \nFiltering a set of 894 edges (59/66 clusters). Pass 0, 1041 triangles, 123 filtered edges\nFiltering a set of 771 edges (59/66 clusters). Pass 1, 48 triangles, 2 filtered edges\nFiltering a set of 769 edges (59/66 clusters). Pass 2, 46 triangles, 0 filtered edges\n4-cycle filtering a set of 769 edges (59/66 clusters). Pass 0, 1981 4-cycles, 8 filtered edges\n4-cycle filtering a set of 761 edges (59/66 clusters). Pass 1, 1145 4-cycles, 0 filtered edges\nFiltering a set of 82 edges (60/66 clusters) \nFiltering a set of 82 edges (60/66 clusters). Pass 0, 202 triangles, 18 filtered edges\nFiltering a set of 64 edges (60/66 clusters). Pass 1, 2 triangles, 0 filtered edges\n4-cycle filtering a set of 64 edges (60/66 clusters). Pass 0, 498 4-cycles, 1 filtered edges\n4-cycle filtering a set of 63 edges (60/66 clusters). Pass 1, 324 4-cycles, 0 filtered edges\nFiltering a set of 171 edges (61/66 clusters) \nFiltering a set of 171 edges (61/66 clusters). Pass 0, 889 triangles, 99 filtered edges\nFiltering a set of 72 edges (61/66 clusters). Pass 1, 26 triangles, 5 filtered edges\nFiltering a set of 67 edges (61/66 clusters). Pass 2, 21 triangles, 0 filtered edges\n4-cycle filtering a set of 67 edges (61/66 clusters). Pass 0, 511 4-cycles, 13 filtered edges\n4-cycle filtering a set of 54 edges (61/66 clusters). Pass 1, 54 4-cycles, 3 filtered edges\n4-cycle filtering a set of 51 edges (61/66 clusters). Pass 2, 49 4-cycles, 1 filtered edges\n4-cycle filtering a set of 50 edges (61/66 clusters). Pass 3, 47 4-cycles, 0 filtered edges\nFiltering a set of 252 edges (62/66 clusters) \nFiltering a set of 252 edges (62/66 clusters). Pass 0, 900 triangles, 56 filtered edges\n4-cycle filtering a set of 196 edges (62/66 clusters). Pass 0, 5479 4-cycles, 0 filtered edges\nFiltering a set of 426 edges (63/66 clusters) \nFiltering a set of 426 edges (63/66 clusters). Pass 0, 3844 triangles, 1 filtered edges\nFiltering a set of 425 edges (63/66 clusters). Pass 1, 1 triangles, 0 filtered edges\n4-cycle filtering a set of 425 edges (63/66 clusters). Pass 0, 32775 4-cycles, 0 filtered edges\nFiltering a set of 1851 edges (64/66 clusters) \nFiltering a set of 1851 edges (64/66 clusters). Pass 0, 12742 triangles, 536 filtered edges\nFiltering a set of 1315 edges (64/66 clusters). Pass 1, 102 triangles, 10 filtered edges\nFiltering a set of 1305 edges (64/66 clusters). Pass 2, 85 triangles, 1 filtered edges\nFiltering a set of 1304 edges (64/66 clusters). Pass 3, 84 triangles, 0 filtered edges\n4-cycle filtering a set of 1304 edges (64/66 clusters). Pass 0, 32770 4-cycles, 7 filtered edges\n4-cycle filtering a set of 1297 edges (64/66 clusters). Pass 1, 65542 4-cycles, 1 filtered edges\n4-cycle filtering a set of 1296 edges (64/66 clusters). Pass 2, 74128 4-cycles, 27 filtered edges\n4-cycle filtering a set of 1269 edges (64/66 clusters). Pass 3, 65199 4-cycles, 0 filtered edges\nFiltering a set of 17870 edges (65/66 clusters) \nFiltering a set of 17870 edges (65/66 clusters). Pass 0, 32768 triangles, 206 filtered edges\nFiltering a set of 17664 edges (65/66 clusters). Pass 1, 65536 triangles, 295 filtered edges\nFiltering a set of 17369 edges (65/66 clusters). Pass 2, 98304 triangles, 747 filtered edges\nFiltering a set of 16622 edges (65/66 clusters). Pass 3, 131072 triangles, 1219 filtered edges\nFiltering a set of 15403 edges (65/66 clusters). Pass 4, 163840 triangles, 2382 filtered edges\nFiltering a set of 13021 edges (65/66 clusters). Pass 5, 148495 triangles, 1120 filtered edges\nFiltering a set of 11901 edges (65/66 clusters). Pass 6, 6193 triangles, 97 filtered edges\nFiltering a set of 11804 edges (65/66 clusters). Pass 7, 5704 triangles, 25 filtered edges\n4-cycle filtering a set of 11779 edges (65/66 clusters). Pass 0, 32795 4-cycles, 25 filtered edges\n4-cycle filtering a set of 11754 edges (65/66 clusters). Pass 1, 65539 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11750 edges (65/66 clusters). Pass 2, 98304 4-cycles, 21 filtered edges\n4-cycle filtering a set of 11729 edges (65/66 clusters). Pass 3, 131101 4-cycles, 4 filtered edges\n4-cycle filtering a set of 11725 edges (65/66 clusters). Pass 4, 163882 4-cycles, 0 filtered edges\nFiltering a set of 63911 edges (66/66 clusters) \nFiltering a set of 63911 edges (66/66 clusters). Pass 0, 32768 triangles, 293 filtered edges\nFiltering a set of 63618 edges (66/66 clusters). Pass 1, 65536 triangles, 119 filtered edges\nFiltering a set of 63499 edges (66/66 clusters). Pass 2, 98304 triangles, 702 filtered edges\nFiltering a set of 62797 edges (66/66 clusters). Pass 3, 131072 triangles, 107 filtered edges\nFiltering a set of 62690 edges (66/66 clusters). Pass 4, 163840 triangles, 236 filtered edges\nFiltering a set of 62454 edges (66/66 clusters). Pass 5, 196608 triangles, 264 filtered edges\nFiltering a set of 62190 edges (66/66 clusters). Pass 6, 229376 triangles, 406 filtered edges\nFiltering a set of 61784 edges (66/66 clusters). Pass 7, 262144 triangles, 1048 filtered edges\n4-cycle filtering a set of 60736 edges (66/66 clusters). Pass 0, 33028 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60728 edges (66/66 clusters). Pass 1, 65735 4-cycles, 8 filtered edges\n4-cycle filtering a set of 60720 edges (66/66 clusters). Pass 2, 98433 4-cycles, 1 filtered edges\n4-cycle filtering a set of 60719 edges (66/66 clusters). Pass 3, 131134 4-cycles, 0 filtered edges\nEdge filtering identified 10249 edges for removal\nEdge filtering removed 10249 edges\nFitting the degree distribution to various densities\n"}