INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/edge/bin/bealign -q -r HXB2_prrt -m HIV_BETWEEN_F -R kp-aligned.fas /tmp/hivtrace-2hpzdd96/kp-aligned.fas_output.bam INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/edge/bin/bam2msa /tmp/hivtrace-2hpzdd96/kp-aligned.fas_output.bam /tmp/hivtrace-2hpzdd96/kp-aligned.fas_output.fasta INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 2, "msg": ""} DEBUG:root:tn93 -q -o /tmp/hivtrace-2hpzdd96/kp-aligned.fas_user.tn93output.csv -t .015 -a resolve -l 500 -g .05 -f csv /tmp/hivtrace-2hpzdd96/kp-aligned.fas_output.fasta INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/edge/bin/hivnetworkcsv -i /tmp/hivtrace-2hpzdd96/kp-aligned.fas_user.tn93output.csv -t .015 -f plain -j -o -n remove -s /tmp/hivtrace-2hpzdd96/kp-aligned.fas_output.fasta INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\nFiltering a set of 92 edges (201/202 clusters). Pass 1, 21 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\nFiltering a set of 92 edges (201/202 clusters). Pass 1, 21 triangles, 1 filtered edges\nFiltering a set of 91 edges (201/202 clusters). Pass 2, 20 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\nFiltering a set of 92 edges (201/202 clusters). Pass 1, 21 triangles, 1 filtered edges\nFiltering a set of 91 edges (201/202 clusters). Pass 2, 20 triangles, 0 filtered edges\nFiltering a set of 835 edges (202/202 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\nFiltering a set of 92 edges (201/202 clusters). Pass 1, 21 triangles, 1 filtered edges\nFiltering a set of 91 edges (201/202 clusters). Pass 2, 20 triangles, 0 filtered edges\nFiltering a set of 835 edges (202/202 clusters) \nFiltering a set of 835 edges (202/202 clusters). Pass 0, 7297 triangles, 622 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\nFiltering a set of 92 edges (201/202 clusters). Pass 1, 21 triangles, 1 filtered edges\nFiltering a set of 91 edges (201/202 clusters). Pass 2, 20 triangles, 0 filtered edges\nFiltering a set of 835 edges (202/202 clusters) \nFiltering a set of 835 edges (202/202 clusters). Pass 0, 7297 triangles, 622 filtered edges\nFiltering a set of 213 edges (202/202 clusters). Pass 1, 49 triangles, 14 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\nFiltering a set of 92 edges (201/202 clusters). Pass 1, 21 triangles, 1 filtered edges\nFiltering a set of 91 edges (201/202 clusters). Pass 2, 20 triangles, 0 filtered edges\nFiltering a set of 835 edges (202/202 clusters) \nFiltering a set of 835 edges (202/202 clusters). Pass 0, 7297 triangles, 622 filtered edges\nFiltering a set of 213 edges (202/202 clusters). Pass 1, 49 triangles, 14 filtered edges\nFiltering a set of 199 edges (202/202 clusters). Pass 2, 33 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\nFiltering a set of 92 edges (201/202 clusters). Pass 1, 21 triangles, 1 filtered edges\nFiltering a set of 91 edges (201/202 clusters). Pass 2, 20 triangles, 0 filtered edges\nFiltering a set of 835 edges (202/202 clusters) \nFiltering a set of 835 edges (202/202 clusters). Pass 0, 7297 triangles, 622 filtered edges\nFiltering a set of 213 edges (202/202 clusters). Pass 1, 49 triangles, 14 filtered edges\nFiltering a set of 199 edges (202/202 clusters). Pass 2, 33 triangles, 0 filtered edges\nEdge filtering identified 1470 edges for removal\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\nFiltering a set of 92 edges (201/202 clusters). Pass 1, 21 triangles, 1 filtered edges\nFiltering a set of 91 edges (201/202 clusters). Pass 2, 20 triangles, 0 filtered edges\nFiltering a set of 835 edges (202/202 clusters) \nFiltering a set of 835 edges (202/202 clusters). Pass 0, 7297 triangles, 622 filtered edges\nFiltering a set of 213 edges (202/202 clusters). Pass 1, 49 triangles, 14 filtered edges\nFiltering a set of 199 edges (202/202 clusters). Pass 2, 33 triangles, 0 filtered edges\nEdge filtering identified 1470 edges for removal\nEdge filtering removed 1470 edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\nFiltering a set of 92 edges (201/202 clusters). Pass 1, 21 triangles, 1 filtered edges\nFiltering a set of 91 edges (201/202 clusters). Pass 2, 20 triangles, 0 filtered edges\nFiltering a set of 835 edges (202/202 clusters) \nFiltering a set of 835 edges (202/202 clusters). Pass 0, 7297 triangles, 622 filtered edges\nFiltering a set of 213 edges (202/202 clusters). Pass 1, 49 triangles, 14 filtered edges\nFiltering a set of 199 edges (202/202 clusters). Pass 2, 33 triangles, 0 filtered edges\nEdge filtering identified 1470 edges for removal\nEdge filtering removed 1470 edges\nFitting the degree distribution to various densities\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 3, "msg": "Running edge filtering on 202 clusters with 3 or more edges\n\nFiltering a set of 1558 edges (190/202 clusters) \nFiltering a set of 1558 edges (190/202 clusters). Pass 0, 1727 triangles, 326 filtered edges\nFiltering a set of 1232 edges (190/202 clusters). Pass 1, 76 triangles, 2 filtered edges\nFiltering a set of 1230 edges (190/202 clusters). Pass 2, 73 triangles, 0 filtered edges\nFiltering a set of 67 edges (191/202 clusters) \nFiltering a set of 67 edges (191/202 clusters). Pass 0, 159 triangles, 23 filtered edges\nFiltering a set of 44 edges (191/202 clusters). Pass 1, 9 triangles, 3 filtered edges\nFiltering a set of 41 edges (191/202 clusters). Pass 2, 6 triangles, 0 filtered edges\nFiltering a set of 87 edges (192/202 clusters) \nFiltering a set of 87 edges (192/202 clusters). Pass 0, 173 triangles, 43 filtered edges\nFiltering a set of 95 edges (193/202 clusters) \nFiltering a set of 95 edges (193/202 clusters). Pass 0, 186 triangles, 42 filtered edges\nFiltering a set of 53 edges (193/202 clusters). Pass 1, 11 triangles, 3 filtered edges\nFiltering a set of 50 edges (193/202 clusters). Pass 2, 8 triangles, 0 filtered edges\nFiltering a set of 105 edges (194/202 clusters) \nFiltering a set of 105 edges (194/202 clusters). Pass 0, 330 triangles, 9 filtered edges\nFiltering a set of 111 edges (195/202 clusters) \nFiltering a set of 111 edges (195/202 clusters). Pass 0, 341 triangles, 17 filtered edges\nFiltering a set of 94 edges (195/202 clusters). Pass 1, 1 triangles, 0 filtered edges\nFiltering a set of 125 edges (196/202 clusters) \nFiltering a set of 125 edges (196/202 clusters). Pass 0, 542 triangles, 28 filtered edges\nFiltering a set of 144 edges (197/202 clusters) \nFiltering a set of 144 edges (197/202 clusters). Pass 0, 430 triangles, 50 filtered edges\nFiltering a set of 94 edges (197/202 clusters). Pass 1, 24 triangles, 1 filtered edges\nFiltering a set of 93 edges (197/202 clusters). Pass 2, 23 triangles, 0 filtered edges\nFiltering a set of 149 edges (198/202 clusters) \nFiltering a set of 149 edges (198/202 clusters). Pass 0, 150 triangles, 12 filtered edges\nFiltering a set of 162 edges (199/202 clusters) \nFiltering a set of 162 edges (199/202 clusters). Pass 0, 845 triangles, 50 filtered edges\nFiltering a set of 166 edges (200/202 clusters) \nFiltering a set of 166 edges (200/202 clusters). Pass 0, 891 triangles, 116 filtered edges\nFiltering a set of 50 edges (200/202 clusters). Pass 1, 21 triangles, 8 filtered edges\nFiltering a set of 42 edges (200/202 clusters). Pass 2, 13 triangles, 0 filtered edges\nFiltering a set of 192 edges (201/202 clusters) \nFiltering a set of 192 edges (201/202 clusters). Pass 0, 843 triangles, 100 filtered edges\nFiltering a set of 92 edges (201/202 clusters). Pass 1, 21 triangles, 1 filtered edges\nFiltering a set of 91 edges (201/202 clusters). Pass 2, 20 triangles, 0 filtered edges\nFiltering a set of 835 edges (202/202 clusters) \nFiltering a set of 835 edges (202/202 clusters). Pass 0, 7297 triangles, 622 filtered edges\nFiltering a set of 213 edges (202/202 clusters). Pass 1, 49 triangles, 14 filtered edges\nFiltering a set of 199 edges (202/202 clusters). Pass 2, 33 triangles, 0 filtered edges\nEdge filtering identified 1470 edges for removal\nEdge filtering removed 1470 edges\nFitting the degree distribution to various densities\n"}