Date:	March 28, 2020
Project: COVID-19 Structome

Protein:		YP_009725309.1_nsp14_3-to-5_exonuclease
Primary sequence:	YP_009725309.1.fasta
Prefilter_file:		YP_009725309.1.pre_filter.Integrated


A] Models:

1. local_modeling_1_525/
	Template_sequence:	5c8t.fasta.txt
	Template_pdb:		5c8t.pdb
	Model_pdb:		YP_009725309_LM_1_525.pdb

	Query_Template_alignment_files:
		align_template_query_original.fasta
		clustal_align_query_template.fasta
		align_template_query.fasta
		additions_query_template.txt
		deletions_query_template.txt
		substitutions_query_template.txt
		substitutions_query_template_vmd.txt


B] Tools_outputs:

tools_outputs/
	YP_009725309.1_3p_to_5p_exonuclease_MatPep.blastp
	YP_009725309.1_3p_to_5p_exonuclease_MatPep.pfam


C] SARS-CoV-1, SARS-CoV-2 comparison:

cov_files/

a) Alignments
	align_cov1_cov2.dnd
	align_cov1_cov2.fasta
	clustal_align_cov1_cov2.out

b) Additions, Deletions, Substitutions
	additions_cov1_cov2.txt
	deletions_cov1_cov2.txt
	substitutions_cov1_cov2.txt
	substitutions_cov1_cov2_vmd.txt
	substitutions_cov1_cov2_ncons.txt