CLUSTAL 2.1 Multiple Sequence Alignments Sequence format is Pearson Sequence 1: sp|P0C6X7|3547-3836 290 aa Sequence 2: YP_009725302.1_nsp6_MatPep 290 aa Output file name is the same as input file. Start of Pairwise alignments Aligning... Sequences (1:2) Aligned. Score: 87 Guide tree file created: [align_cov1_cov2.dnd] There are 1 groups Start of Multiple Alignment Aligning... Group 1: Sequences: 2 Score:6057 Alignment Score 1643 firstres = 1 lastres = 290 FASTA file created! Fasta-Alignment file created [align_cov1_cov2.fasta]