Date:	March 28, 2020
Project: COVID-19 Structome

Protein:		YP_009724391.1_4_ORF3a
Primary sequence:	YP_009724391.1_4.fasta
Prefilter_file:		YP_009724391.1_4.pre_filter.Integrated

A] Models:

1. abinitio_1_275
	Model_method:	trRosetta
	Model_score:	model_eval
	Model_pdb:	YP_009724391.1_4_AB_1_275.pdb

2. abinitio_126_275
        Model_method:   trRosetta
        Model_score:    model_eval
        Model_pdb:      YP_009724391.1_4_AB_126_275.pdb


B] Tools_outputs:

tools_outputs/
	NC_045512.2_prot_YP_009724391.1_4_CDS.pfam 
	NC_045512.2_prot_YP_009724391.1_4_CDS.tmhmm


C] SARS-CoV-1, SARS-CoV-2 comparison:

cov_files/

a) Alignments
	align_cov1_cov2.dnd
	align_cov1_cov2.fasta
	clustal_align_cov1_cov2.out

b) Additions, Deletions, Substitutions
	additions_cov1_cov2.txt
	deletions_cov1_cov2.txt
	substitutions_cov1_cov2.txt
	substitutions_cov1_cov2_vmd.txt