HCV Pipeline Summary Report - Two-Stage Pipeline

Processing Summary

Total Expected Combinations: 432

Successfully Processed: 384

Processing Rate: 88.9%

Generated: 2025-07-17 22:43:02

Genotype Coverage

Genotype Consensus Thresholds Available Coverage
1a 0.01, 0.02, 0.05, 0.1, 0.2, 0.25 100%
1b 0.01, 0.02, 0.05, 0.1, 0.2, 0.25 100%
2a 0.2, 0.25 33%
2b 0.01, 0.02, 0.05, 0.1, 0.2, 0.25 100%
3a 0.01, 0.02, 0.05, 0.1, 0.2, 0.25 100%
4d 0.01, 0.02, 0.05, 0.1, 0.2, 0.25 100%

Missing Combinations

The following genotype/consensus combinations were not processed (likely due to consensus generation failures):

Technical Details

Pipeline completed with available files. Missing combinations are likely due to: