INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/edge/bin/bealign -q -r ./rsrc/ref.fasta -m HIV_BETWEEN_F -R data/pangea/./rsrc/1/1_0.8/phylo_1_pol.fasta.fixed.fas /tmp/hivtrace-wbtjnuiy/phylo_1_pol.fasta.fixed.fas_output.bam INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/edge/bin/bealign -q -r ./rsrc/ref.fasta -m HIV_BETWEEN_F -R data/pangea/./rsrc/1/1_0.8/phylo_1_pol.fasta.fixed.fas /tmp/hivtrace-_7hciycu/phylo_1_pol.fasta.fixed.fas_output.bam INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/edge/bin/bam2msa /tmp/hivtrace-_7hciycu/phylo_1_pol.fasta.fixed.fas_output.bam /tmp/hivtrace-_7hciycu/phylo_1_pol.fasta.fixed.fas_output.fasta INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 2, "msg": ""} DEBUG:root:tn93 -q -o /tmp/hivtrace-_7hciycu/phylo_1_pol.fasta.fixed.fas_user.tn93output.csv -t 0.022 -a resolve -l 500 -g .05 -f csv /tmp/hivtrace-_7hciycu/phylo_1_pol.fasta.fixed.fas_output.fasta INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/edge/bin/hivnetworkcsv -i /tmp/hivtrace-_7hciycu/phylo_1_pol.fasta.fixed.fas_user.tn93output.csv -t 0.022 -f plain -j -o -n remove -s /tmp/hivtrace-_7hciycu/phylo_1_pol.fasta.fixed.fas_output.fasta INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\nFiltering a set of 151 edges (480/480 clusters). Pass 2, 335 triangles, 10 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\nFiltering a set of 151 edges (480/480 clusters). Pass 2, 335 triangles, 10 filtered edges\nFiltering a set of 141 edges (480/480 clusters). Pass 3, 257 triangles, 9 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\nFiltering a set of 151 edges (480/480 clusters). Pass 2, 335 triangles, 10 filtered edges\nFiltering a set of 141 edges (480/480 clusters). Pass 3, 257 triangles, 9 filtered edges\nFiltering a set of 132 edges (480/480 clusters). Pass 4, 198 triangles, 8 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\nFiltering a set of 151 edges (480/480 clusters). Pass 2, 335 triangles, 10 filtered edges\nFiltering a set of 141 edges (480/480 clusters). Pass 3, 257 triangles, 9 filtered edges\nFiltering a set of 132 edges (480/480 clusters). Pass 4, 198 triangles, 8 filtered edges\nFiltering a set of 124 edges (480/480 clusters). Pass 5, 154 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\nFiltering a set of 151 edges (480/480 clusters). Pass 2, 335 triangles, 10 filtered edges\nFiltering a set of 141 edges (480/480 clusters). Pass 3, 257 triangles, 9 filtered edges\nFiltering a set of 132 edges (480/480 clusters). Pass 4, 198 triangles, 8 filtered edges\nFiltering a set of 124 edges (480/480 clusters). Pass 5, 154 triangles, 1 filtered edges\nFiltering a set of 123 edges (480/480 clusters). Pass 6, 147 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\nFiltering a set of 151 edges (480/480 clusters). Pass 2, 335 triangles, 10 filtered edges\nFiltering a set of 141 edges (480/480 clusters). Pass 3, 257 triangles, 9 filtered edges\nFiltering a set of 132 edges (480/480 clusters). Pass 4, 198 triangles, 8 filtered edges\nFiltering a set of 124 edges (480/480 clusters). Pass 5, 154 triangles, 1 filtered edges\nFiltering a set of 123 edges (480/480 clusters). Pass 6, 147 triangles, 1 filtered edges\nFiltering a set of 122 edges (480/480 clusters). Pass 7, 141 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\nFiltering a set of 151 edges (480/480 clusters). Pass 2, 335 triangles, 10 filtered edges\nFiltering a set of 141 edges (480/480 clusters). Pass 3, 257 triangles, 9 filtered edges\nFiltering a set of 132 edges (480/480 clusters). Pass 4, 198 triangles, 8 filtered edges\nFiltering a set of 124 edges (480/480 clusters). Pass 5, 154 triangles, 1 filtered edges\nFiltering a set of 123 edges (480/480 clusters). Pass 6, 147 triangles, 1 filtered edges\nFiltering a set of 122 edges (480/480 clusters). Pass 7, 141 triangles, 1 filtered edges\nEdge filtering identified 765 edges for removal\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\nFiltering a set of 151 edges (480/480 clusters). Pass 2, 335 triangles, 10 filtered edges\nFiltering a set of 141 edges (480/480 clusters). Pass 3, 257 triangles, 9 filtered edges\nFiltering a set of 132 edges (480/480 clusters). Pass 4, 198 triangles, 8 filtered edges\nFiltering a set of 124 edges (480/480 clusters). Pass 5, 154 triangles, 1 filtered edges\nFiltering a set of 123 edges (480/480 clusters). Pass 6, 147 triangles, 1 filtered edges\nFiltering a set of 122 edges (480/480 clusters). Pass 7, 141 triangles, 1 filtered edges\nEdge filtering identified 765 edges for removal\nEdge filtering removed 765 edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\nFiltering a set of 151 edges (480/480 clusters). Pass 2, 335 triangles, 10 filtered edges\nFiltering a set of 141 edges (480/480 clusters). Pass 3, 257 triangles, 9 filtered edges\nFiltering a set of 132 edges (480/480 clusters). Pass 4, 198 triangles, 8 filtered edges\nFiltering a set of 124 edges (480/480 clusters). Pass 5, 154 triangles, 1 filtered edges\nFiltering a set of 123 edges (480/480 clusters). Pass 6, 147 triangles, 1 filtered edges\nFiltering a set of 122 edges (480/480 clusters). Pass 7, 141 triangles, 1 filtered edges\nEdge filtering identified 765 edges for removal\nEdge filtering removed 765 edges\nFitting the degree distribution to various densities\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 3, "msg": "Running edge filtering on 480 clusters with 3 or more edges\n\nFiltering a set of 3533 edges (475/480 clusters) \nFiltering a set of 3533 edges (475/480 clusters). Pass 0, 3647 triangles, 436 filtered edges\nFiltering a set of 3097 edges (475/480 clusters). Pass 1, 924 triangles, 56 filtered edges\nFiltering a set of 3041 edges (475/480 clusters). Pass 2, 839 triangles, 12 filtered edges\nFiltering a set of 3029 edges (475/480 clusters). Pass 3, 819 triangles, 4 filtered edges\nFiltering a set of 3025 edges (475/480 clusters). Pass 4, 815 triangles, 0 filtered edges\nFiltering a set of 70 edges (476/480 clusters) \nFiltering a set of 70 edges (476/480 clusters). Pass 0, 196 triangles, 0 filtered edges\nFiltering a set of 78 edges (477/480 clusters) \nFiltering a set of 78 edges (477/480 clusters). Pass 0, 286 triangles, 11 filtered edges\nFiltering a set of 67 edges (477/480 clusters). Pass 1, 114 triangles, 5 filtered edges\nFiltering a set of 62 edges (477/480 clusters). Pass 2, 86 triangles, 5 filtered edges\nFiltering a set of 57 edges (477/480 clusters). Pass 3, 68 triangles, 8 filtered edges\nFiltering a set of 49 edges (477/480 clusters). Pass 4, 43 triangles, 4 filtered edges\nFiltering a set of 45 edges (477/480 clusters). Pass 5, 36 triangles, 4 filtered edges\nFiltering a set of 41 edges (477/480 clusters). Pass 6, 33 triangles, 0 filtered edges\nFiltering a set of 113 edges (478/480 clusters) \nFiltering a set of 113 edges (478/480 clusters). Pass 0, 455 triangles, 47 filtered edges\nFiltering a set of 66 edges (478/480 clusters). Pass 1, 39 triangles, 13 filtered edges\nFiltering a set of 53 edges (478/480 clusters). Pass 2, 18 triangles, 3 filtered edges\nFiltering a set of 50 edges (478/480 clusters). Pass 3, 15 triangles, 0 filtered edges\nFiltering a set of 120 edges (479/480 clusters) \nFiltering a set of 120 edges (479/480 clusters). Pass 0, 560 triangles, 24 filtered edges\nFiltering a set of 96 edges (479/480 clusters). Pass 1, 181 triangles, 6 filtered edges\nFiltering a set of 90 edges (479/480 clusters). Pass 2, 144 triangles, 6 filtered edges\nFiltering a set of 84 edges (479/480 clusters). Pass 3, 125 triangles, 2 filtered edges\nFiltering a set of 82 edges (479/480 clusters). Pass 4, 118 triangles, 2 filtered edges\nFiltering a set of 80 edges (479/480 clusters). Pass 5, 114 triangles, 1 filtered edges\nFiltering a set of 79 edges (479/480 clusters). Pass 6, 112 triangles, 1 filtered edges\nFiltering a set of 78 edges (479/480 clusters). Pass 7, 111 triangles, 0 filtered edges\nFiltering a set of 236 edges (480/480 clusters) \nFiltering a set of 236 edges (480/480 clusters). Pass 0, 1550 triangles, 77 filtered edges\nFiltering a set of 159 edges (480/480 clusters). Pass 1, 384 triangles, 8 filtered edges\nFiltering a set of 151 edges (480/480 clusters). Pass 2, 335 triangles, 10 filtered edges\nFiltering a set of 141 edges (480/480 clusters). Pass 3, 257 triangles, 9 filtered edges\nFiltering a set of 132 edges (480/480 clusters). Pass 4, 198 triangles, 8 filtered edges\nFiltering a set of 124 edges (480/480 clusters). Pass 5, 154 triangles, 1 filtered edges\nFiltering a set of 123 edges (480/480 clusters). Pass 6, 147 triangles, 1 filtered edges\nFiltering a set of 122 edges (480/480 clusters). Pass 7, 141 triangles, 1 filtered edges\nEdge filtering identified 765 edges for removal\nEdge filtering removed 765 edges\nFitting the degree distribution to various densities\n"}