INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bealign -q -r ./rsrc/ref.fasta -m HIV_BETWEEN_F -R rsrc/papers/33901684/sequence.fasta /tmp/hivtrace-u_5bkj6l/sequence.fasta_output.bam INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bam2msa /tmp/hivtrace-u_5bkj6l/sequence.fasta_output.bam /tmp/hivtrace-u_5bkj6l/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 2, "msg": ""} DEBUG:root:tn93 -q -0 -o /tmp/hivtrace-u_5bkj6l/sequence.fasta_user.tn93output.csv -t 0.015 -a resolve -l 500 -g .05 -f csv /tmp/hivtrace-u_5bkj6l/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/hivnetworkcsv -i /tmp/hivtrace-u_5bkj6l/sequence.fasta_user.tn93output.csv -t 0.015 -f plain -J -q -n remove -s /tmp/hivtrace-u_5bkj6l/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\nFiltering a set of 28279 edges (45/45 clusters). Pass 2, 98304 triangles, 287 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\nFiltering a set of 28279 edges (45/45 clusters). Pass 2, 98304 triangles, 287 filtered edges\nFiltering a set of 27992 edges (45/45 clusters). Pass 3, 131072 triangles, 1390 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\nFiltering a set of 28279 edges (45/45 clusters). Pass 2, 98304 triangles, 287 filtered edges\nFiltering a set of 27992 edges (45/45 clusters). Pass 3, 131072 triangles, 1390 filtered edges\nFiltering a set of 26602 edges (45/45 clusters). Pass 4, 163840 triangles, 517 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\nFiltering a set of 28279 edges (45/45 clusters). Pass 2, 98304 triangles, 287 filtered edges\nFiltering a set of 27992 edges (45/45 clusters). Pass 3, 131072 triangles, 1390 filtered edges\nFiltering a set of 26602 edges (45/45 clusters). Pass 4, 163840 triangles, 517 filtered edges\nFiltering a set of 26085 edges (45/45 clusters). Pass 5, 196608 triangles, 411 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\nFiltering a set of 28279 edges (45/45 clusters). Pass 2, 98304 triangles, 287 filtered edges\nFiltering a set of 27992 edges (45/45 clusters). Pass 3, 131072 triangles, 1390 filtered edges\nFiltering a set of 26602 edges (45/45 clusters). Pass 4, 163840 triangles, 517 filtered edges\nFiltering a set of 26085 edges (45/45 clusters). Pass 5, 196608 triangles, 411 filtered edges\nFiltering a set of 25674 edges (45/45 clusters). Pass 6, 229376 triangles, 2152 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\nFiltering a set of 28279 edges (45/45 clusters). Pass 2, 98304 triangles, 287 filtered edges\nFiltering a set of 27992 edges (45/45 clusters). Pass 3, 131072 triangles, 1390 filtered edges\nFiltering a set of 26602 edges (45/45 clusters). Pass 4, 163840 triangles, 517 filtered edges\nFiltering a set of 26085 edges (45/45 clusters). Pass 5, 196608 triangles, 411 filtered edges\nFiltering a set of 25674 edges (45/45 clusters). Pass 6, 229376 triangles, 2152 filtered edges\nFiltering a set of 23522 edges (45/45 clusters). Pass 7, 262144 triangles, 850 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\nFiltering a set of 28279 edges (45/45 clusters). Pass 2, 98304 triangles, 287 filtered edges\nFiltering a set of 27992 edges (45/45 clusters). Pass 3, 131072 triangles, 1390 filtered edges\nFiltering a set of 26602 edges (45/45 clusters). Pass 4, 163840 triangles, 517 filtered edges\nFiltering a set of 26085 edges (45/45 clusters). Pass 5, 196608 triangles, 411 filtered edges\nFiltering a set of 25674 edges (45/45 clusters). Pass 6, 229376 triangles, 2152 filtered edges\nFiltering a set of 23522 edges (45/45 clusters). Pass 7, 262144 triangles, 850 filtered edges\nEdge filtering identified 9405 edges for removal\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\nFiltering a set of 28279 edges (45/45 clusters). Pass 2, 98304 triangles, 287 filtered edges\nFiltering a set of 27992 edges (45/45 clusters). Pass 3, 131072 triangles, 1390 filtered edges\nFiltering a set of 26602 edges (45/45 clusters). Pass 4, 163840 triangles, 517 filtered edges\nFiltering a set of 26085 edges (45/45 clusters). Pass 5, 196608 triangles, 411 filtered edges\nFiltering a set of 25674 edges (45/45 clusters). Pass 6, 229376 triangles, 2152 filtered edges\nFiltering a set of 23522 edges (45/45 clusters). Pass 7, 262144 triangles, 850 filtered edges\nEdge filtering identified 9405 edges for removal\nEdge filtering removed 9405 edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\nFiltering a set of 28279 edges (45/45 clusters). Pass 2, 98304 triangles, 287 filtered edges\nFiltering a set of 27992 edges (45/45 clusters). Pass 3, 131072 triangles, 1390 filtered edges\nFiltering a set of 26602 edges (45/45 clusters). Pass 4, 163840 triangles, 517 filtered edges\nFiltering a set of 26085 edges (45/45 clusters). Pass 5, 196608 triangles, 411 filtered edges\nFiltering a set of 25674 edges (45/45 clusters). Pass 6, 229376 triangles, 2152 filtered edges\nFiltering a set of 23522 edges (45/45 clusters). Pass 7, 262144 triangles, 850 filtered edges\nEdge filtering identified 9405 edges for removal\nEdge filtering removed 9405 edges\nFitting the degree distribution to various densities\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 3, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 202 filtered edges\nFiltering a set of 8106 edges (44/45 clusters). Pass 1, 65536 triangles, 348 filtered edges\nFiltering a set of 7758 edges (44/45 clusters). Pass 2, 98304 triangles, 1143 filtered edges\nFiltering a set of 6615 edges (44/45 clusters). Pass 3, 68881 triangles, 852 filtered edges\nFiltering a set of 5763 edges (44/45 clusters). Pass 4, 1484 triangles, 63 filtered edges\nFiltering a set of 5700 edges (44/45 clusters). Pass 5, 1286 triangles, 12 filtered edges\nFiltering a set of 5688 edges (44/45 clusters). Pass 6, 1246 triangles, 6 filtered edges\nFiltering a set of 5682 edges (44/45 clusters). Pass 7, 1220 triangles, 6 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 187 filtered edges\nFiltering a set of 28926 edges (45/45 clusters). Pass 1, 65536 triangles, 647 filtered edges\nFiltering a set of 28279 edges (45/45 clusters). Pass 2, 98304 triangles, 287 filtered edges\nFiltering a set of 27992 edges (45/45 clusters). Pass 3, 131072 triangles, 1390 filtered edges\nFiltering a set of 26602 edges (45/45 clusters). Pass 4, 163840 triangles, 517 filtered edges\nFiltering a set of 26085 edges (45/45 clusters). Pass 5, 196608 triangles, 411 filtered edges\nFiltering a set of 25674 edges (45/45 clusters). Pass 6, 229376 triangles, 2152 filtered edges\nFiltering a set of 23522 edges (45/45 clusters). Pass 7, 262144 triangles, 850 filtered edges\nEdge filtering identified 9405 edges for removal\nEdge filtering removed 9405 edges\nFitting the degree distribution to various densities\n"}