INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bealign -q -r ./rsrc/ref.fasta -m HIV_BETWEEN_F -R rsrc/papers/33901684/sequence.fasta /tmp/hivtrace-vjzijeud/sequence.fasta_output.bam INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bam2msa /tmp/hivtrace-vjzijeud/sequence.fasta_output.bam /tmp/hivtrace-vjzijeud/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 2, "msg": ""} DEBUG:root:tn93 -q -0 -o /tmp/hivtrace-vjzijeud/sequence.fasta_user.tn93output.csv -t 0.01215 -a resolve -l 500 -g .05 -f csv /tmp/hivtrace-vjzijeud/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/hivnetworkcsv -i /tmp/hivtrace-vjzijeud/sequence.fasta_user.tn93output.csv -t 0.01215 -f plain -J -q -n remove -s /tmp/hivtrace-vjzijeud/sequence.fasta_output.fasta -l --cycle-report-file data/hivtrace/33901684_nodes.cycle_report.json INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\nFiltering a set of 8060 edges (42/42 clusters). Pass 4, 780 triangles, 16 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\nFiltering a set of 8060 edges (42/42 clusters). Pass 4, 780 triangles, 16 filtered edges\nFiltering a set of 8044 edges (42/42 clusters). Pass 5, 751 triangles, 5 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\nFiltering a set of 8060 edges (42/42 clusters). Pass 4, 780 triangles, 16 filtered edges\nFiltering a set of 8044 edges (42/42 clusters). Pass 5, 751 triangles, 5 filtered edges\nFiltering a set of 8039 edges (42/42 clusters). Pass 6, 741 triangles, 3 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\nFiltering a set of 8060 edges (42/42 clusters). Pass 4, 780 triangles, 16 filtered edges\nFiltering a set of 8044 edges (42/42 clusters). Pass 5, 751 triangles, 5 filtered edges\nFiltering a set of 8039 edges (42/42 clusters). Pass 6, 741 triangles, 3 filtered edges\nFiltering a set of 8036 edges (42/42 clusters). Pass 7, 738 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\nFiltering a set of 8060 edges (42/42 clusters). Pass 4, 780 triangles, 16 filtered edges\nFiltering a set of 8044 edges (42/42 clusters). Pass 5, 751 triangles, 5 filtered edges\nFiltering a set of 8039 edges (42/42 clusters). Pass 6, 741 triangles, 3 filtered edges\nFiltering a set of 8036 edges (42/42 clusters). Pass 7, 738 triangles, 0 filtered edges\n4-cycle filtering a set of 8036 edges (42/42 clusters). Pass 0, 32813 4-cycles, 4 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\nFiltering a set of 8060 edges (42/42 clusters). Pass 4, 780 triangles, 16 filtered edges\nFiltering a set of 8044 edges (42/42 clusters). Pass 5, 751 triangles, 5 filtered edges\nFiltering a set of 8039 edges (42/42 clusters). Pass 6, 741 triangles, 3 filtered edges\nFiltering a set of 8036 edges (42/42 clusters). Pass 7, 738 triangles, 0 filtered edges\n4-cycle filtering a set of 8036 edges (42/42 clusters). Pass 0, 32813 4-cycles, 4 filtered edges\n4-cycle filtering a set of 8032 edges (42/42 clusters). Pass 1, 65542 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\nFiltering a set of 8060 edges (42/42 clusters). Pass 4, 780 triangles, 16 filtered edges\nFiltering a set of 8044 edges (42/42 clusters). Pass 5, 751 triangles, 5 filtered edges\nFiltering a set of 8039 edges (42/42 clusters). Pass 6, 741 triangles, 3 filtered edges\nFiltering a set of 8036 edges (42/42 clusters). Pass 7, 738 triangles, 0 filtered edges\n4-cycle filtering a set of 8036 edges (42/42 clusters). Pass 0, 32813 4-cycles, 4 filtered edges\n4-cycle filtering a set of 8032 edges (42/42 clusters). Pass 1, 65542 4-cycles, 0 filtered edges\nEdge filtering identified 5047 edges for removal\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\nFiltering a set of 8060 edges (42/42 clusters). Pass 4, 780 triangles, 16 filtered edges\nFiltering a set of 8044 edges (42/42 clusters). Pass 5, 751 triangles, 5 filtered edges\nFiltering a set of 8039 edges (42/42 clusters). Pass 6, 741 triangles, 3 filtered edges\nFiltering a set of 8036 edges (42/42 clusters). Pass 7, 738 triangles, 0 filtered edges\n4-cycle filtering a set of 8036 edges (42/42 clusters). Pass 0, 32813 4-cycles, 4 filtered edges\n4-cycle filtering a set of 8032 edges (42/42 clusters). Pass 1, 65542 4-cycles, 0 filtered edges\nEdge filtering identified 5047 edges for removal\nEdge filtering removed 5047 edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\nFiltering a set of 8060 edges (42/42 clusters). Pass 4, 780 triangles, 16 filtered edges\nFiltering a set of 8044 edges (42/42 clusters). Pass 5, 751 triangles, 5 filtered edges\nFiltering a set of 8039 edges (42/42 clusters). Pass 6, 741 triangles, 3 filtered edges\nFiltering a set of 8036 edges (42/42 clusters). Pass 7, 738 triangles, 0 filtered edges\n4-cycle filtering a set of 8036 edges (42/42 clusters). Pass 0, 32813 4-cycles, 4 filtered edges\n4-cycle filtering a set of 8032 edges (42/42 clusters). Pass 1, 65542 4-cycles, 0 filtered edges\nEdge filtering identified 5047 edges for removal\nEdge filtering removed 5047 edges\nFitting the degree distribution to various densities\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 3, "msg": "Running edge filtering on 42 clusters with 3 or more edges\n\nFiltering a set of 346 edges (37/42 clusters) \nFiltering a set of 346 edges (37/42 clusters). Pass 0, 470 triangles, 96 filtered edges\nFiltering a set of 250 edges (37/42 clusters). Pass 1, 18 triangles, 1 filtered edges\nFiltering a set of 249 edges (37/42 clusters). Pass 2, 17 triangles, 0 filtered edges\n4-cycle filtering a set of 249 edges (37/42 clusters). Pass 0, 306 4-cycles, 12 filtered edges\n4-cycle filtering a set of 237 edges (37/42 clusters). Pass 1, 84 4-cycles, 0 filtered edges\nFiltering a set of 67 edges (38/42 clusters) \nFiltering a set of 67 edges (38/42 clusters). Pass 0, 220 triangles, 39 filtered edges\nFiltering a set of 28 edges (38/42 clusters). Pass 1, 10 triangles, 1 filtered edges\nFiltering a set of 27 edges (38/42 clusters). Pass 2, 9 triangles, 0 filtered edges\n4-cycle filtering a set of 27 edges (38/42 clusters). Pass 0, 60 4-cycles, 6 filtered edges\n4-cycle filtering a set of 21 edges (38/42 clusters). Pass 1, 1 4-cycles, 1 filtered edges\nFiltering a set of 86 edges (39/42 clusters) \nFiltering a set of 86 edges (39/42 clusters). Pass 0, 253 triangles, 21 filtered edges\n4-cycle filtering a set of 65 edges (39/42 clusters). Pass 0, 811 4-cycles, 0 filtered edges\nFiltering a set of 434 edges (40/42 clusters) \nFiltering a set of 434 edges (40/42 clusters). Pass 0, 2123 triangles, 69 filtered edges\n4-cycle filtering a set of 365 edges (40/42 clusters). Pass 0, 16676 4-cycles, 0 filtered edges\nFiltering a set of 5989 edges (41/42 clusters) \nFiltering a set of 5989 edges (41/42 clusters). Pass 0, 32768 triangles, 227 filtered edges\nFiltering a set of 5762 edges (41/42 clusters). Pass 1, 65536 triangles, 1095 filtered edges\nFiltering a set of 4667 edges (41/42 clusters). Pass 2, 40516 triangles, 507 filtered edges\nFiltering a set of 4160 edges (41/42 clusters). Pass 3, 179 triangles, 10 filtered edges\nFiltering a set of 4150 edges (41/42 clusters). Pass 4, 164 triangles, 0 filtered edges\n4-cycle filtering a set of 4150 edges (41/42 clusters). Pass 0, 32779 4-cycles, 1 filtered edges\n4-cycle filtering a set of 4149 edges (41/42 clusters). Pass 1, 65550 4-cycles, 2 filtered edges\n4-cycle filtering a set of 4147 edges (41/42 clusters). Pass 2, 98315 4-cycles, 0 filtered edges\nFiltering a set of 10991 edges (42/42 clusters) \nFiltering a set of 10991 edges (42/42 clusters). Pass 0, 32768 triangles, 341 filtered edges\nFiltering a set of 10650 edges (42/42 clusters). Pass 1, 65536 triangles, 553 filtered edges\nFiltering a set of 10097 edges (42/42 clusters). Pass 2, 98304 triangles, 1576 filtered edges\nFiltering a set of 8521 edges (42/42 clusters). Pass 3, 43331 triangles, 461 filtered edges\nFiltering a set of 8060 edges (42/42 clusters). Pass 4, 780 triangles, 16 filtered edges\nFiltering a set of 8044 edges (42/42 clusters). Pass 5, 751 triangles, 5 filtered edges\nFiltering a set of 8039 edges (42/42 clusters). Pass 6, 741 triangles, 3 filtered edges\nFiltering a set of 8036 edges (42/42 clusters). Pass 7, 738 triangles, 0 filtered edges\n4-cycle filtering a set of 8036 edges (42/42 clusters). Pass 0, 32813 4-cycles, 4 filtered edges\n4-cycle filtering a set of 8032 edges (42/42 clusters). Pass 1, 65542 4-cycles, 0 filtered edges\nEdge filtering identified 5047 edges for removal\nEdge filtering removed 5047 edges\nFitting the degree distribution to various densities\n"}