INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bealign -q -r ./rsrc/ref.fasta -m HIV_BETWEEN_F -R rsrc/papers/33901684/sequence.fasta /tmp/hivtrace-6jy4at_l/sequence.fasta_output.bam INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bam2msa /tmp/hivtrace-6jy4at_l/sequence.fasta_output.bam /tmp/hivtrace-6jy4at_l/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 2, "msg": ""} DEBUG:root:tn93 -q -0 -o /tmp/hivtrace-6jy4at_l/sequence.fasta_user.tn93output.csv -t 0.015 -a resolve -l 500 -g .05 -f csv /tmp/hivtrace-6jy4at_l/sequence.fasta_output.fasta INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 3, "msg": ""} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": ""} DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/hivnetworkcsv -i /tmp/hivtrace-6jy4at_l/sequence.fasta_user.tn93output.csv -t 0.015 -f plain -J -q -n remove -s /tmp/hivtrace-6jy4at_l/sequence.fasta_output.fasta -l --cycle-report-file data/hivtrace/33901684_nodes.cycle_report.default.json INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n4-cycle filtering a set of 24098 edges (45/45 clusters). Pass 2, 98455 4-cycles, 52 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n4-cycle filtering a set of 24098 edges (45/45 clusters). Pass 2, 98455 4-cycles, 52 filtered edges\n4-cycle filtering a set of 24046 edges (45/45 clusters). Pass 3, 131085 4-cycles, 29 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n4-cycle filtering a set of 24098 edges (45/45 clusters). Pass 2, 98455 4-cycles, 52 filtered edges\n4-cycle filtering a set of 24046 edges (45/45 clusters). Pass 3, 131085 4-cycles, 29 filtered edges\n4-cycle filtering a set of 24017 edges (45/45 clusters). Pass 4, 163872 4-cycles, 12 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n4-cycle filtering a set of 24098 edges (45/45 clusters). Pass 2, 98455 4-cycles, 52 filtered edges\n4-cycle filtering a set of 24046 edges (45/45 clusters). Pass 3, 131085 4-cycles, 29 filtered edges\n4-cycle filtering a set of 24017 edges (45/45 clusters). Pass 4, 163872 4-cycles, 12 filtered edges\n4-cycle filtering a set of 24005 edges (45/45 clusters). Pass 5, 196727 4-cycles, 7 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n4-cycle filtering a set of 24098 edges (45/45 clusters). Pass 2, 98455 4-cycles, 52 filtered edges\n4-cycle filtering a set of 24046 edges (45/45 clusters). Pass 3, 131085 4-cycles, 29 filtered edges\n4-cycle filtering a set of 24017 edges (45/45 clusters). Pass 4, 163872 4-cycles, 12 filtered edges\n4-cycle filtering a set of 24005 edges (45/45 clusters). Pass 5, 196727 4-cycles, 7 filtered edges\n4-cycle filtering a set of 23998 edges (45/45 clusters). Pass 6, 229457 4-cycles, 6 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n4-cycle filtering a set of 24098 edges (45/45 clusters). Pass 2, 98455 4-cycles, 52 filtered edges\n4-cycle filtering a set of 24046 edges (45/45 clusters). Pass 3, 131085 4-cycles, 29 filtered edges\n4-cycle filtering a set of 24017 edges (45/45 clusters). Pass 4, 163872 4-cycles, 12 filtered edges\n4-cycle filtering a set of 24005 edges (45/45 clusters). Pass 5, 196727 4-cycles, 7 filtered edges\n4-cycle filtering a set of 23998 edges (45/45 clusters). Pass 6, 229457 4-cycles, 6 filtered edges\n4-cycle filtering a set of 23992 edges (45/45 clusters). Pass 7, 262304 4-cycles, 23 filtered edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n4-cycle filtering a set of 24098 edges (45/45 clusters). Pass 2, 98455 4-cycles, 52 filtered edges\n4-cycle filtering a set of 24046 edges (45/45 clusters). Pass 3, 131085 4-cycles, 29 filtered edges\n4-cycle filtering a set of 24017 edges (45/45 clusters). Pass 4, 163872 4-cycles, 12 filtered edges\n4-cycle filtering a set of 24005 edges (45/45 clusters). Pass 5, 196727 4-cycles, 7 filtered edges\n4-cycle filtering a set of 23998 edges (45/45 clusters). Pass 6, 229457 4-cycles, 6 filtered edges\n4-cycle filtering a set of 23992 edges (45/45 clusters). Pass 7, 262304 4-cycles, 23 filtered edges\nEdge filtering identified 8237 edges for removal\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n4-cycle filtering a set of 24098 edges (45/45 clusters). Pass 2, 98455 4-cycles, 52 filtered edges\n4-cycle filtering a set of 24046 edges (45/45 clusters). Pass 3, 131085 4-cycles, 29 filtered edges\n4-cycle filtering a set of 24017 edges (45/45 clusters). Pass 4, 163872 4-cycles, 12 filtered edges\n4-cycle filtering a set of 24005 edges (45/45 clusters). Pass 5, 196727 4-cycles, 7 filtered edges\n4-cycle filtering a set of 23998 edges (45/45 clusters). Pass 6, 229457 4-cycles, 6 filtered edges\n4-cycle filtering a set of 23992 edges (45/45 clusters). Pass 7, 262304 4-cycles, 23 filtered edges\nEdge filtering identified 8237 edges for removal\nEdge filtering removed 8237 edges\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n4-cycle filtering a set of 24098 edges (45/45 clusters). Pass 2, 98455 4-cycles, 52 filtered edges\n4-cycle filtering a set of 24046 edges (45/45 clusters). Pass 3, 131085 4-cycles, 29 filtered edges\n4-cycle filtering a set of 24017 edges (45/45 clusters). Pass 4, 163872 4-cycles, 12 filtered edges\n4-cycle filtering a set of 24005 edges (45/45 clusters). Pass 5, 196727 4-cycles, 7 filtered edges\n4-cycle filtering a set of 23998 edges (45/45 clusters). Pass 6, 229457 4-cycles, 6 filtered edges\n4-cycle filtering a set of 23992 edges (45/45 clusters). Pass 7, 262304 4-cycles, 23 filtered edges\nEdge filtering identified 8237 edges for removal\nEdge filtering removed 8237 edges\nFitting the degree distribution to various densities\n"} INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 3, "msg": "Running edge filtering on 45 clusters with 3 or more edges\n\nFiltering a set of 533 edges (41/45 clusters) \nFiltering a set of 533 edges (41/45 clusters). Pass 0, 594 triangles, 96 filtered edges\nFiltering a set of 437 edges (41/45 clusters). Pass 1, 33 triangles, 1 filtered edges\nFiltering a set of 436 edges (41/45 clusters). Pass 2, 32 triangles, 0 filtered edges\n4-cycle filtering a set of 436 edges (41/45 clusters). Pass 0, 534 4-cycles, 10 filtered edges\n4-cycle filtering a set of 426 edges (41/45 clusters). Pass 1, 296 4-cycles, 0 filtered edges\nFiltering a set of 133 edges (42/45 clusters) \nFiltering a set of 133 edges (42/45 clusters). Pass 0, 503 triangles, 27 filtered edges\n4-cycle filtering a set of 106 edges (42/45 clusters). Pass 0, 2639 4-cycles, 0 filtered edges\nFiltering a set of 896 edges (43/45 clusters) \nFiltering a set of 896 edges (43/45 clusters). Pass 0, 5247 triangles, 201 filtered edges\nFiltering a set of 695 edges (43/45 clusters). Pass 1, 42 triangles, 7 filtered edges\nFiltering a set of 688 edges (43/45 clusters). Pass 2, 33 triangles, 0 filtered edges\n4-cycle filtering a set of 688 edges (43/45 clusters). Pass 0, 32771 4-cycles, 1 filtered edges\n4-cycle filtering a set of 687 edges (43/45 clusters). Pass 1, 27381 4-cycles, 9 filtered edges\n4-cycle filtering a set of 678 edges (43/45 clusters). Pass 2, 24365 4-cycles, 1 filtered edges\n4-cycle filtering a set of 677 edges (43/45 clusters). Pass 3, 24363 4-cycles, 0 filtered edges\nFiltering a set of 8308 edges (44/45 clusters) \nFiltering a set of 8308 edges (44/45 clusters). Pass 0, 32768 triangles, 162 filtered edges\nFiltering a set of 8146 edges (44/45 clusters). Pass 1, 65536 triangles, 657 filtered edges\nFiltering a set of 7489 edges (44/45 clusters). Pass 2, 98304 triangles, 859 filtered edges\nFiltering a set of 6630 edges (44/45 clusters). Pass 3, 66624 triangles, 909 filtered edges\nFiltering a set of 5721 edges (44/45 clusters). Pass 4, 1293 triangles, 56 filtered edges\nFiltering a set of 5665 edges (44/45 clusters). Pass 5, 1141 triangles, 9 filtered edges\nFiltering a set of 5656 edges (44/45 clusters). Pass 6, 1094 triangles, 10 filtered edges\nFiltering a set of 5646 edges (44/45 clusters). Pass 7, 1064 triangles, 4 filtered edges\n4-cycle filtering a set of 5642 edges (44/45 clusters). Pass 0, 32784 4-cycles, 43 filtered edges\n4-cycle filtering a set of 5599 edges (44/45 clusters). Pass 1, 65559 4-cycles, 17 filtered edges\n4-cycle filtering a set of 5582 edges (44/45 clusters). Pass 2, 98375 4-cycles, 3 filtered edges\n4-cycle filtering a set of 5579 edges (44/45 clusters). Pass 3, 131115 4-cycles, 8 filtered edges\n4-cycle filtering a set of 5571 edges (44/45 clusters). Pass 4, 163876 4-cycles, 2 filtered edges\n4-cycle filtering a set of 5569 edges (44/45 clusters). Pass 5, 196654 4-cycles, 1 filtered edges\n4-cycle filtering a set of 5568 edges (44/45 clusters). Pass 6, 229377 4-cycles, 0 filtered edges\nFiltering a set of 29113 edges (45/45 clusters) \nFiltering a set of 29113 edges (45/45 clusters). Pass 0, 32768 triangles, 322 filtered edges\nFiltering a set of 28791 edges (45/45 clusters). Pass 1, 65536 triangles, 582 filtered edges\nFiltering a set of 28209 edges (45/45 clusters). Pass 2, 98304 triangles, 444 filtered edges\nFiltering a set of 27765 edges (45/45 clusters). Pass 3, 131072 triangles, 651 filtered edges\nFiltering a set of 27114 edges (45/45 clusters). Pass 4, 163840 triangles, 417 filtered edges\nFiltering a set of 26697 edges (45/45 clusters). Pass 5, 196608 triangles, 854 filtered edges\nFiltering a set of 25843 edges (45/45 clusters). Pass 6, 229376 triangles, 775 filtered edges\nFiltering a set of 25068 edges (45/45 clusters). Pass 7, 262144 triangles, 897 filtered edges\n4-cycle filtering a set of 24171 edges (45/45 clusters). Pass 0, 32849 4-cycles, 47 filtered edges\n4-cycle filtering a set of 24124 edges (45/45 clusters). Pass 1, 65569 4-cycles, 26 filtered edges\n4-cycle filtering a set of 24098 edges (45/45 clusters). Pass 2, 98455 4-cycles, 52 filtered edges\n4-cycle filtering a set of 24046 edges (45/45 clusters). Pass 3, 131085 4-cycles, 29 filtered edges\n4-cycle filtering a set of 24017 edges (45/45 clusters). Pass 4, 163872 4-cycles, 12 filtered edges\n4-cycle filtering a set of 24005 edges (45/45 clusters). Pass 5, 196727 4-cycles, 7 filtered edges\n4-cycle filtering a set of 23998 edges (45/45 clusters). Pass 6, 229457 4-cycles, 6 filtered edges\n4-cycle filtering a set of 23992 edges (45/45 clusters). Pass 7, 262304 4-cycles, 23 filtered edges\nEdge filtering identified 8237 edges for removal\nEdge filtering removed 8237 edges\nFitting the degree distribution to various densities\n"}