INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 2, "msg": ""}
DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bealign -q -r ./rsrc/ref.fasta -m HIV_BETWEEN_F -R rsrc/papers/33281803/sequence.fasta /tmp/hivtrace-k729ffck/sequence.fasta_output.bam
INFO:root:{"type": "status update", "index": 0, "title": "Aligning", "status": 3, "msg": ""}
INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 2, "msg": ""}
DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/bam2msa /tmp/hivtrace-k729ffck/sequence.fasta_output.bam /tmp/hivtrace-k729ffck/sequence.fasta_output.fasta
INFO:root:{"type": "status update", "index": 1, "title": "BAM to FASTA conversion", "status": 3, "msg": ""}
INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 2, "msg": ""}
DEBUG:root:tn93 -q -0 -o /tmp/hivtrace-k729ffck/sequence.fasta_user.tn93output.csv -t 0.015 -a resolve -l 500 -g .05 -f csv /tmp/hivtrace-k729ffck/sequence.fasta_output.fasta
INFO:root:{"type": "status update", "index": 3, "title": "Computing pairwise TN93 distances", "status": 3, "msg": ""}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": ""}
DEBUG:root:/home/sweaver/programming/hivtrace/env39/bin/hivnetworkcsv -i /tmp/hivtrace-k729ffck/sequence.fasta_user.tn93output.csv -t 0.015 -f plain -J -q -n remove -s /tmp/hivtrace-k729ffck/sequence.fasta_output.fasta -l --cycle-report-file data/hivtrace/33281803_nodes.cycle_report.default.json
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n4-cycle filtering a set of 14497 edges (23/23 clusters). Pass 2, 98399 4-cycles, 37 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n4-cycle filtering a set of 14497 edges (23/23 clusters). Pass 2, 98399 4-cycles, 37 filtered edges\n4-cycle filtering a set of 14460 edges (23/23 clusters). Pass 3, 131074 4-cycles, 18 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n4-cycle filtering a set of 14497 edges (23/23 clusters). Pass 2, 98399 4-cycles, 37 filtered edges\n4-cycle filtering a set of 14460 edges (23/23 clusters). Pass 3, 131074 4-cycles, 18 filtered edges\n4-cycle filtering a set of 14442 edges (23/23 clusters). Pass 4, 163855 4-cycles, 14 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n4-cycle filtering a set of 14497 edges (23/23 clusters). Pass 2, 98399 4-cycles, 37 filtered edges\n4-cycle filtering a set of 14460 edges (23/23 clusters). Pass 3, 131074 4-cycles, 18 filtered edges\n4-cycle filtering a set of 14442 edges (23/23 clusters). Pass 4, 163855 4-cycles, 14 filtered edges\n4-cycle filtering a set of 14428 edges (23/23 clusters). Pass 5, 196613 4-cycles, 10 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n4-cycle filtering a set of 14497 edges (23/23 clusters). Pass 2, 98399 4-cycles, 37 filtered edges\n4-cycle filtering a set of 14460 edges (23/23 clusters). Pass 3, 131074 4-cycles, 18 filtered edges\n4-cycle filtering a set of 14442 edges (23/23 clusters). Pass 4, 163855 4-cycles, 14 filtered edges\n4-cycle filtering a set of 14428 edges (23/23 clusters). Pass 5, 196613 4-cycles, 10 filtered edges\n4-cycle filtering a set of 14418 edges (23/23 clusters). Pass 6, 229439 4-cycles, 53 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n4-cycle filtering a set of 14497 edges (23/23 clusters). Pass 2, 98399 4-cycles, 37 filtered edges\n4-cycle filtering a set of 14460 edges (23/23 clusters). Pass 3, 131074 4-cycles, 18 filtered edges\n4-cycle filtering a set of 14442 edges (23/23 clusters). Pass 4, 163855 4-cycles, 14 filtered edges\n4-cycle filtering a set of 14428 edges (23/23 clusters). Pass 5, 196613 4-cycles, 10 filtered edges\n4-cycle filtering a set of 14418 edges (23/23 clusters). Pass 6, 229439 4-cycles, 53 filtered edges\n4-cycle filtering a set of 14365 edges (23/23 clusters). Pass 7, 262151 4-cycles, 18 filtered edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n4-cycle filtering a set of 14497 edges (23/23 clusters). Pass 2, 98399 4-cycles, 37 filtered edges\n4-cycle filtering a set of 14460 edges (23/23 clusters). Pass 3, 131074 4-cycles, 18 filtered edges\n4-cycle filtering a set of 14442 edges (23/23 clusters). Pass 4, 163855 4-cycles, 14 filtered edges\n4-cycle filtering a set of 14428 edges (23/23 clusters). Pass 5, 196613 4-cycles, 10 filtered edges\n4-cycle filtering a set of 14418 edges (23/23 clusters). Pass 6, 229439 4-cycles, 53 filtered edges\n4-cycle filtering a set of 14365 edges (23/23 clusters). Pass 7, 262151 4-cycles, 18 filtered edges\nEdge filtering identified 13467 edges for removal\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n4-cycle filtering a set of 14497 edges (23/23 clusters). Pass 2, 98399 4-cycles, 37 filtered edges\n4-cycle filtering a set of 14460 edges (23/23 clusters). Pass 3, 131074 4-cycles, 18 filtered edges\n4-cycle filtering a set of 14442 edges (23/23 clusters). Pass 4, 163855 4-cycles, 14 filtered edges\n4-cycle filtering a set of 14428 edges (23/23 clusters). Pass 5, 196613 4-cycles, 10 filtered edges\n4-cycle filtering a set of 14418 edges (23/23 clusters). Pass 6, 229439 4-cycles, 53 filtered edges\n4-cycle filtering a set of 14365 edges (23/23 clusters). Pass 7, 262151 4-cycles, 18 filtered edges\nEdge filtering identified 13467 edges for removal\nEdge filtering removed 13467 edges\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 2, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n4-cycle filtering a set of 14497 edges (23/23 clusters). Pass 2, 98399 4-cycles, 37 filtered edges\n4-cycle filtering a set of 14460 edges (23/23 clusters). Pass 3, 131074 4-cycles, 18 filtered edges\n4-cycle filtering a set of 14442 edges (23/23 clusters). Pass 4, 163855 4-cycles, 14 filtered edges\n4-cycle filtering a set of 14428 edges (23/23 clusters). Pass 5, 196613 4-cycles, 10 filtered edges\n4-cycle filtering a set of 14418 edges (23/23 clusters). Pass 6, 229439 4-cycles, 53 filtered edges\n4-cycle filtering a set of 14365 edges (23/23 clusters). Pass 7, 262151 4-cycles, 18 filtered edges\nEdge filtering identified 13467 edges for removal\nEdge filtering removed 13467 edges\nFitting the degree distribution to various densities\n"}
INFO:root:{"type": "status update", "index": 4, "title": "Inferring, filtering, and analyzing molecular transmission network", "status": 3, "msg": "Running edge filtering on 23 clusters with 3 or more edges\n\nFiltering a set of 451 edges (21/23 clusters)                                                                                 \nFiltering a set of 451 edges (21/23 clusters). Pass 0, 1190 triangles, 199 filtered edges\nFiltering a set of 252 edges (21/23 clusters). Pass 1, 119 triangles, 8 filtered edges\nFiltering a set of 244 edges (21/23 clusters). Pass 2, 107 triangles, 1 filtered edges\nFiltering a set of 243 edges (21/23 clusters). Pass 3, 102 triangles, 1 filtered edges\nFiltering a set of 242 edges (21/23 clusters). Pass 4, 98 triangles, 1 filtered edges\nFiltering a set of 241 edges (21/23 clusters). Pass 5, 95 triangles, 1 filtered edges\nFiltering a set of 240 edges (21/23 clusters). Pass 6, 93 triangles, 1 filtered edges\nFiltering a set of 239 edges (21/23 clusters). Pass 7, 92 triangles, 0 filtered edges\n4-cycle filtering a set of 239 edges (21/23 clusters). Pass 0, 627 4-cycles, 11 filtered edges\n4-cycle filtering a set of 228 edges (21/23 clusters). Pass 1, 330 4-cycles, 3 filtered edges\n4-cycle filtering a set of 225 edges (21/23 clusters). Pass 2, 302 4-cycles, 1 filtered edges\n4-cycle filtering a set of 224 edges (21/23 clusters). Pass 3, 281 4-cycles, 1 filtered edges\n4-cycle filtering a set of 223 edges (21/23 clusters). Pass 4, 265 4-cycles, 1 filtered edges\n4-cycle filtering a set of 222 edges (21/23 clusters). Pass 5, 254 4-cycles, 1 filtered edges\n4-cycle filtering a set of 221 edges (21/23 clusters). Pass 6, 248 4-cycles, 0 filtered edges\nFiltering a set of 406 edges (22/23 clusters)                                                                                 \nFiltering a set of 406 edges (22/23 clusters). Pass 0, 1594 triangles, 115 filtered edges\nFiltering a set of 291 edges (22/23 clusters). Pass 1, 30 triangles, 8 filtered edges\nFiltering a set of 283 edges (22/23 clusters). Pass 2, 22 triangles, 0 filtered edges\n4-cycle filtering a set of 283 edges (22/23 clusters). Pass 0, 5778 4-cycles, 24 filtered edges\n4-cycle filtering a set of 259 edges (22/23 clusters). Pass 1, 1124 4-cycles, 6 filtered edges\n4-cycle filtering a set of 253 edges (22/23 clusters). Pass 2, 995 4-cycles, 0 filtered edges\nFiltering a set of 27431 edges (23/23 clusters)                                                                                 \nFiltering a set of 27431 edges (23/23 clusters). Pass 0, 32768 triangles, 2798 filtered edges\nFiltering a set of 24633 edges (23/23 clusters). Pass 1, 65536 triangles, 1873 filtered edges\nFiltering a set of 22760 edges (23/23 clusters). Pass 2, 98304 triangles, 3356 filtered edges\nFiltering a set of 19404 edges (23/23 clusters). Pass 3, 121376 triangles, 4567 filtered edges\nFiltering a set of 14837 edges (23/23 clusters). Pass 4, 1801 triangles, 137 filtered edges\nFiltering a set of 14700 edges (23/23 clusters). Pass 5, 1535 triangles, 33 filtered edges\nFiltering a set of 14667 edges (23/23 clusters). Pass 6, 1468 triangles, 26 filtered edges\nFiltering a set of 14641 edges (23/23 clusters). Pass 7, 1443 triangles, 2 filtered edges\n4-cycle filtering a set of 14639 edges (23/23 clusters). Pass 0, 32889 4-cycles, 122 filtered edges\n4-cycle filtering a set of 14517 edges (23/23 clusters). Pass 1, 65567 4-cycles, 20 filtered edges\n4-cycle filtering a set of 14497 edges (23/23 clusters). Pass 2, 98399 4-cycles, 37 filtered edges\n4-cycle filtering a set of 14460 edges (23/23 clusters). Pass 3, 131074 4-cycles, 18 filtered edges\n4-cycle filtering a set of 14442 edges (23/23 clusters). Pass 4, 163855 4-cycles, 14 filtered edges\n4-cycle filtering a set of 14428 edges (23/23 clusters). Pass 5, 196613 4-cycles, 10 filtered edges\n4-cycle filtering a set of 14418 edges (23/23 clusters). Pass 6, 229439 4-cycles, 53 filtered edges\n4-cycle filtering a set of 14365 edges (23/23 clusters). Pass 7, 262151 4-cycles, 18 filtered edges\nEdge filtering identified 13467 edges for removal\nEdge filtering removed 13467 edges\nFitting the degree distribution to various densities\n"}