{
"MLE":{
"content":{
"0":{
"by-branch":{
"AVERAGED": [
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[3.981372417334034, 7.684001172792541, 2, 3, 0.3412983207587812, 0.5023393419044229, 0.3904215957986029, -0.01280218707280859, 0.7781841996522494, 0.554731759599972, 0.5195070001379307],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[37.51879828449929, 89.9340750889603, 0, 2, 0.2943738912387054, 0, 0.02223851191021485, 0.002543846705296071, 0.4979082053656062, 1, 0.2446866767367061],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[2.7946199003454, 9.097274423252237, 1, 1, 0.2350020799293437, 0.3578304154623694, 0.1099230333696479, -0.02835793958252538, 0.9447740224288824, 0.4147781822875697, 1.016289447123851],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[3.192394180316424, 8.807605819683577, 1, 1, 0.266032848359702, 0.3132445254304034, 0.1135382328038752, -0.02284425309462979, 0.9292265235936239, 0.4612922203130279, 0.2681722273241533],
[3.089535219212947, 8.890656070187269, 3.5, 3.5, 0.2578869689623815, 1.132856482177154, 0.3936717349506331, -0.08455478907172648, 0.9535693433903778, 0.1691001056829984, 0.9269017543435202],
[2.854077764114093, 9.145922235885907, 0, 1, 0.2378398136761744, 0, 0.1093383449157587, 0.01250713130444307, 0.7621601863238257, 1, 0.2903080492406604],
[36.78583430731021, 90.84534919351678, 0, 1, 0.288219800978903, 0, 0.01100771815924029, 0.001259164627798184, 0.711780199021097, 1, 0.2027630776805294],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[15.18812281365133, 31.87139622700138, 7.833333333333333, 23.16666666666667, 0.3227428397755396, 0.5157538841003186, 0.72687956629399, 0.02415050850614976, 0.2674292009421361, 0.8455183198384759, 2.273446084510415],
[36.19767052642257, 85.5494650809096, 4.5, 7.5, 0.2973184571928654, 0.1243173921016607, 0.08766857855752541, -0.004192230305861226, 0.808531108722926, 0.3842488810556698, 1.062036248729403],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[36.12897436942196, 85.44275126763634, 1, 1, 0.2971823767417914, 0.02767861577732353, 0.01170374297601505, -0.001827353723450634, 0.9116826349540998, 0.5060473884376828, 0.0128533058216722],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[37.37451695166079, 90.15306549115778, 1, 2, 0.2930700655947819, 0.026756198649828, 0.02218449244186999, -0.000522954045740519, 0.7926734229553291, 0.6467118132404155, 0.01924297888451067],
[37.12046783735741, 90.45890269829026, 1, 0, 0.2909597976656059, 0.02693931564606028, 0, -0.003081568120467791, 1, 0.290959797665606, 0.008962116959753874],
[38.03518002689226, 89.93206026847143, 14, 25, 0.2972259145317389, 0.3680802875154394, 0.2779876267191952, -0.01030563192641554, 0.8458960372720575, 0.2478899427130721, 1.011432380788788],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[38.39766159598393, 90.03430794342432, 0, 1, 0.2989727692698969, 0, 0.01110687717651341, 0.001270507353444982, 0.7010272307301031, 1, 0.02046177412126886],
[14.36768763255122, 27.27556518483664, 1, 0, 0.345018380181677, 0.06960062228346441, 0, -0.00796156300372873, 1, 0.3450183801816771, 0.1160922915842698],
[14.05637772469741, 27.29227639436015, 0, 1, 0.3399476482166522, 0, 0.03664040278467377, 0.004191268205391936, 0.6600523517833478, 1, 0.127769936468002],
[12.16267584943963, 29.42652154722096, 0, 1, 0.2924479579020737, 0, 0.03398294964613104, 0.003887284133154824, 0.7075520420979263, 1, 0.1033120303515676],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[12.26858445562373, 29.32061294103686, 0, 1, 0.2949944991390683, 0, 0.03410569901833155, 0.003901325341816181, 0.7050055008609317, 1, 0.1538344563428284],
[12.56318315395403, 29.02601424270656, 1, 0, 0.3020780380571325, 0.07959766149594566, 0, -0.009105116824508656, 1, 0.3020780380571324, 0.1430573555500244],
[14.05930278591414, 27.45140725352996, 6.333333333333333, 13.66666666666667, 0.3386909733067631, 0.4504727887131522, 0.4978494013238348, 0.005419375198500368, 0.5200604227365108, 0.6603958993620918, 0.5522689488334274],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[14.66228633088151, 26.98096648650634, 0, 1, 0.3520927242446194, 0, 0.0370631645274871, 0.004239627604209755, 0.6479072757553805, 1, 0.1443369071600548],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[39.07282981446684, 89.29968186117273, 3, 5, 0.304370688899448, 0.07677969612759504, 0.05599124090691735, -0.002377975807680963, 0.7978884559455455, 0.459320374567455, 0.4025691818024323],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0]
],
"NAMES": [
["epi_isl_453320_England_20200410_null_1"],
["epi_isl_453338_England_20200411_null_6"],
["epi_isl_449506_England_20200331_null_2"],
["epi_isl_477219_Karnataka_20200611_null_1"],
["epi_isl_508833_Florida_20200406_null_1"],
["Node30"],
["epi_isl_463896_Zhejiang_20200131_null_1"],
["epi_isl_490842_Wales_20200406_null_7"],
["epi_isl_477213_Karnataka_20200527_null_1"],
["epi_isl_430896_Washington_20200329_null_1"],
["epi_isl_472891_Wales_20200519_null_2"],
["Node21"],
["epi_isl_413747_China_20200201_null_1"],
["Node19"],
["epi_isl_486362_California_20200521_null_1"],
["epi_isl_521889_Victoria_20200326_null_13"],
["epi_isl_477236_Karnataka_20200616_null_1"],
["epi_isl_479751_Karnataka_20200617_null_1"],
["Node11"],
["epi_isl_494337_Wales_20200521_null_10"],
["Node10"],
["epi_isl_478427_England_20200401_null_3"],
["Node9"],
["epi_isl_428830_Singapore_20200227_null_16"],
["Node4"],
["epi_isl_449433_England_20200327_null_2"],
["Node3"],
["epi_isl_479752_Karnataka_20200617_null_1"],
["epi_isl_489824_Florida_20200515_null_1"],
["epi_isl_460625_Washington_20200331_null_2"],
["epi_isl_496661_Panama_Center_20200309_null_1"],
["epi_isl_496779_Panama_West_20200330_null_3"],
["Node42"],
["epi_isl_477216_Karnataka_20200609_null_1"],
["Node41"],
["epi_isl_479738_Karnataka_20200602_null_1"],
["Node40"],
["epi_isl_424220_Washington_20200321_null_1"],
["Node35"],
["epi_isl_450857_Florida_20200410_null_1"]
],
"RESOLVED": [
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[3.981372417334034, 7.684001172792541, 2, 3, 0.3412983207587812, 0.5023393419044229, 0.3904215957986029, -0.01280218707280859, 0.7781841996522494, 0.554731759599972, 0.5195070001379307],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[37.51879828449929, 89.9340750889603, 0, 2, 0.2943738912387054, 0, 0.02223851191021485, 0.002543846705296071, 0.4979082053656062, 1, 0.2446866767367061],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[2.7946199003454, 9.097274423252237, 1, 1, 0.2350020799293437, 0.3578304154623694, 0.1099230333696479, -0.02835793958252538, 0.9447740224288824, 0.4147781822875697, 1.016289447123851],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[3.192394180316424, 8.807605819683577, 1, 1, 0.266032848359702, 0.3132445254304034, 0.1135382328038752, -0.02284425309462979, 0.9292265235936239, 0.4612922203130279, 0.2681722273241533],
[3.089535219212947, 8.890656070187269, 3.5, 3.5, 0.2578869689623815, 1.132856482177154, 0.3936717349506331, -0.08455478907172648, 0.9535693433903778, 0.1691001056829984, 0.9269017543435202],
[2.854077764114093, 9.145922235885907, 0, 1, 0.2378398136761744, 0, 0.1093383449157587, 0.01250713130444307, 0.7621601863238257, 1, 0.2903080492406604],
[36.78583430731021, 90.84534919351678, 0, 1, 0.288219800978903, 0, 0.01100771815924029, 0.001259164627798184, 0.711780199021097, 1, 0.2027630776805294],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[15.18812281365133, 31.87139622700138, 7.833333333333333, 23.16666666666667, 0.3227428397755396, 0.5157538841003186, 0.72687956629399, 0.02415050850614976, 0.2674292009421361, 0.8455183198384759, 2.273446084510415],
[36.19767052642257, 85.5494650809096, 4.5, 7.5, 0.2973184571928654, 0.1243173921016607, 0.08766857855752541, -0.004192230305861226, 0.808531108722926, 0.3842488810556698, 1.062036248729403],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[36.12897436942196, 85.44275126763634, 1, 1, 0.2971823767417914, 0.02767861577732353, 0.01170374297601505, -0.001827353723450634, 0.9116826349540998, 0.5060473884376828, 0.0128533058216722],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[37.37451695166079, 90.15306549115778, 1, 2, 0.2930700655947819, 0.026756198649828, 0.02218449244186999, -0.000522954045740519, 0.7926734229553291, 0.6467118132404155, 0.01924297888451067],
[37.12046783735741, 90.45890269829026, 1, 0, 0.2909597976656059, 0.02693931564606028, 0, -0.003081568120467791, 1, 0.290959797665606, 0.008962116959753874],
[38.03518002689226, 89.93206026847143, 14, 25, 0.2972259145317389, 0.3680802875154394, 0.2779876267191952, -0.01030563192641554, 0.8458960372720575, 0.2478899427130721, 1.011432380788788],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[38.39766159598393, 90.03430794342432, 0, 1, 0.2989727692698969, 0, 0.01110687717651341, 0.001270507353444982, 0.7010272307301031, 1, 0.02046177412126886],
[14.36768763255122, 27.27556518483664, 1, 0, 0.345018380181677, 0.06960062228346441, 0, -0.00796156300372873, 1, 0.3450183801816771, 0.1160922915842698],
[14.05637772469741, 27.29227639436015, 0, 1, 0.3399476482166522, 0, 0.03664040278467377, 0.004191268205391936, 0.6600523517833478, 1, 0.127769936468002],
[12.16267584943963, 29.42652154722096, 0, 1, 0.2924479579020737, 0, 0.03398294964613104, 0.003887284133154824, 0.7075520420979263, 1, 0.1033120303515676],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[12.26858445562373, 29.32061294103686, 0, 1, 0.2949944991390683, 0, 0.03410569901833155, 0.003901325341816181, 0.7050055008609317, 1, 0.1538344563428284],
[12.56318315395403, 29.02601424270656, 1, 0, 0.3020780380571325, 0.07959766149594566, 0, -0.009105116824508656, 1, 0.3020780380571324, 0.1430573555500244],
[14.05930278591414, 27.45140725352996, 6.333333333333333, 13.66666666666667, 0.3386909733067631, 0.4504727887131522, 0.4978494013238348, 0.005419375198500368, 0.5200604227365108, 0.6603958993620918, 0.5522689488334274],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[14.66228633088151, 26.98096648650634, 0, 1, 0.3520927242446194, 0, 0.0370631645274871, 0.004239627604209755, 0.6479072757553805, 1, 0.1443369071600548],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[39.07282981446684, 89.29968186117273, 3, 5, 0.304370688899448, 0.07677969612759504, 0.05599124090691735, -0.002377975807680963, 0.7978884559455455, 0.459320374567455, 0.4025691818024323],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0]
]
},
"by-site":{
"AVERAGED": [
[0.3252094394256539, 1.616619752253318, 1, 6, 0.1674758216733093, 3.074941495443923, 3.711447909526608, 0.07244606542984433, 0.6675196953242548, 0.7228097267588032, 8.785934892476236],
[0.4976318834619854, 1.468281816416221, 0, 6, 0.253130075594272, 0, 4.08640898015395, 0.4651080425889922, 0.1735680672721326, 1, 8.785934892476236],
[0.4336470096352044, 1.463148267181128, 1.5, 3.5, 0.2286208822509603, 3.459034575752847, 2.392102070928894, -0.1214364228600887, 0.7977851120825739, 0.5245275972869261, 8.785934892476236],
[0.6681310406046198, 1.288850462358728, 3, 5, 0.3414089706994707, 4.490137140290884, 3.879426004820985, -0.06951009117912729, 0.7246122406870877, 0.5515039454736466, 8.785934892476236],
[0.6531353740806924, 1.237595709366454, 1.5, 4.5, 0.3454406498093362, 2.296614238834169, 3.636082418468973, 0.1524559646784825, 0.4919770074209311, 0.7968306102546712, 8.785934892476236],
[1.086169679744439, 1.857693681187147, 8.5, 10.5, 0.3689606298169765, 7.825664956878501, 5.652169734081265, -0.2324063884106997, 0.822045856372055, 0.3185643687485593, 9.352132003171613],
[0.8205932341294105, 2.145608309559166, 4.166666666666666, 5.833333333333334, 0.2766478346272364, 5.077627371723573, 2.718731702960194, -0.2451996955861153, 0.9003226679616768, 0.259996119314031, 9.620304230495767],
[0.7743282893701507, 2.187499017757055, 4.5, 10.5, 0.2614360018583266, 5.811488565993581, 4.80000215532263, -0.1273981765269147, 0.7367587823350688, 0.4655195838221433, 7.939567411761661],
[0.8693409880350339, 2.032096083188356, 3, 6, 0.2996242781403757, 3.450889859433502, 2.952616290951168, -0.06495214449297973, 0.7305179482258224, 0.5361659451240114, 7.671395184437507],
[0.5724743742035958, 1.330156800226184, 1, 4, 0.3008856271763585, 1.746803079860406, 3.007164267641099, 0.1451590386677555, 0.5263981518042269, 0.8329905085559974, 8.682622862124669],
[0.896853467340785, 1.051597019412546, 0.5, 3.5, 0.4602906121752143, 0.5575046740718134, 3.328271129900317, 0.3191162969792388, 0.229572154636779, 0.9151523361120077, 8.682622862124669],
[0.574570641205868, 1.345536332573734, 1.333333333333333, 7.666666666666666, 0.2992388700484037, 2.32057337725267, 5.697851838754819, 0.3889698441509548, 0.2865282529867677, 0.9070463117134506, 8.682622862124669],
[0.6754296938776713, 1.233247711097254, 0.6666666666666666, 4.333333333333334, 0.3538731543199383, 0.9870259965020257, 3.513757450624294, 0.2910101583640555, 0.3182009826261344, 0.8873868961318421, 8.682622862124669],
[0.9048041640863548, 1.009529943207129, 2.5, 1.5, 0.4726469432055315, 2.763028840085443, 1.485840028909613, -0.1470971193217642, 0.8387313320083177, 0.4590113453598867, 8.682622862124669],
[0.4209075972226017, 1.087059843480711, 3, 3, 0.2791224703275365, 7.127455098923806, 2.759737670369784, -0.4980131525943176, 0.9448846681721657, 0.2180445078904052, 8.7702852942761],
[0.4050504619792241, 1.102916978724089, 1, 0, 0.2686069016120861, 2.468828192698845, 0, -0.281499188436905, 1, 0.268606901612086, 8.7702852942761],
[0.2217876449567569, 0.1957984567257801, 1, 0, 0.5311183587363913, 4.508817432977275, 0, -0.5849340630194303, 1, 0.5311183587363913, 7.708249045546697],
[0.1986325319130237, 0.2108361834351072, 1, 0, 0.4850981881342169, 5.034422057500005, 0, -0.6531213545063845, 1, 0.4850981881342169, 7.708249045546697],
[0.1019382340412585, 0.3156478676412785, 1, 0, 0.2441130910021411, 9.809861916925694, 0, -1.272644651069385, 1, 0.2441130910021411, 7.708249045546697],
[0.1310779808931062, 0.2865081207894308, 0, 1, 0.3138945007148635, 0, 3.490302464183729, 0.4528009465651852, 0.6861054992851365, 1, 7.708249045546697],
[0.1391953672275123, 0.2783907344550247, 0, 0, 0.3333333333333334, 0, 0, 0, 1, 1, 7.708249045546697],
[0.1751724222007837, 0.2258611611180603, 0, 0, 0.4368023763773217, 0, 0, 0, 1, 1, 7.708249045546697],
[0.1226428488638193, 0.2949432528187177, 0, 0, 0.2936947574875384, 0, 0, 0, 1, 1, 7.708249045546697],
[0, 0.417586101682537, 0, 0, 0, null, 0, null, 1, 1, 7.708249045546697],
[0.1310779808931062, 0.2865081207894308, 0, 1, 0.3138945007148635, 0, 3.490302464183729, 0.4528009465651852, 0.6861054992851365, 1, 7.708249045546697],
[0.1226428488638193, 0.2949432528187177, 0, 0, 0.2936947574875384, 0, 0, 0, 1, 1, 7.708249045546697],
[0.1299934190729449, 0.287592682609592, 1, 0, 0.3112972834804026, 7.692697115989055, 0, -0.9979824303203296, 1, 0.3112972834804026, 7.708249045546697],
[0.1226428488638193, 0.2949432528187177, 0, 0, 0.2936947574875384, 0, 0, 0, 1, 1, 7.708249045546697],
[0, 0.2180937426221927, 0, 0, 0, null, 0, null, 1, 1, 7.708249045546697],
[0.1019382340412584, 0.3011471933952464, 1, 1, 0.2528948632292494, 9.809861916925698, 3.320635297063954, -0.8418548209221105, 0.9360441881522592, 0.441833914610758, 7.708249045546697],
[0.1568385830799583, 0.2234992738778806, 1, 1, 0.4123664794623484, 6.37598211079341, 4.474287467020575, -0.2467090298375227, 0.8299538866158284, 0.6546868455405255, 7.708249045546697],
[0.1300665390756532, 0.2845135835324732, 0, 1, 0.3137307651351052, 0, 3.514770674862574, 0.4565059995117811, 0.6862692348648948, 1, 7.699286928586943],
[0.05215144102460437, 0.329579490906853, 0, 0, 0.1366183263188338, 0, 0, 0, 1, 1, 7.699286928586943],
[0.2201959539027223, 0.1943841687054042, 1, 0, 0.5311300322781227, 4.5414095140085, 0, -0.5898480672471819, 1, 0.5311300322781227, 7.699286928586943],
[0.05215144102460437, 0.2810055052675432, 0, 0, 0.1565371564513994, 0, 0, 0, 1, 1, 7.699286928586943],
[0.1217600085685477, 0.2928201140395789, 0, 0, 0.2936947574875384, 0, 0, 0, 1, 1, 7.699286928586943],
[0.1217600085685477, 0.2846932789125232, 0, 1, 0.2995670408354569, 0, 3.512552188867327, 0.4562178577636136, 0.7004329591645431, 1, 7.699286928586943],
[0.1217600085685477, 0.2928201140395789, 0, 0, 0.2936947574875384, 0, 0, 0, 1, 1, 7.699286928586943],
[0.05215144102460437, 0.329579490906853, 0, 0, 0.1366183263188338, 0, 0, 0, 1, 1, 7.699286928586943],
[0.1300249441178118, 0.2845551784903147, 1, 2, 0.3136304348115484, 7.690831992159362, 7.028513803933719, -0.08602331545360381, 0.7666077703966439, 0.6766491151728458, 7.699286928586943],
[0.1217600085685477, 0.2846932789125232, 0, 1, 0.2995670408354569, 0, 3.512552188867327, 0.4562178577636136, 0.7004329591645431, 1, 7.699286928586943],
[0.1026918050776333, 0.2972604362713541, 2, 3, 0.2567601689923454, 19.47575075234127, 10.09216038847985, -1.218760964605795, 0.8892263800924372, 0.3814449352544675, 7.699286928586943],
[0.118037598773706, 0.236075197547412, 1, 1, 0.3333333333333333, 8.471876845928852, 4.235938422964426, -0.4845458205387174, 0.8888888888888891, 0.5555555555555555, 8.742080198431834],
[0.04454505077865143, 0.3095677455424667, 0, 0, 0.1257933947641273, 0, 0, 0, 1, 1, 8.742080198431834]
],
"RESOLVED": [
[0.3252094394256539, 1.616619752253318, 1, 6, 0.1674758216733093, 3.074941495443923, 3.711447909526608, 0.07244606542984433, 0.6675196953242548, 0.7228097267588032, 8.785934892476236],
[0.4976318834619854, 1.468281816416221, 0, 6, 0.253130075594272, 0, 4.08640898015395, 0.4651080425889922, 0.1735680672721326, 1, 8.785934892476236],
[0.4336470096352044, 1.463148267181128, 1.5, 3.5, 0.2286208822509603, 3.459034575752847, 2.392102070928894, -0.1214364228600887, 0.7977851120825739, 0.5245275972869261, 8.785934892476236],
[0.6681310406046198, 1.288850462358728, 3, 5, 0.3414089706994707, 4.490137140290884, 3.879426004820985, -0.06951009117912729, 0.7246122406870877, 0.5515039454736466, 8.785934892476236],
[0.6531353740806924, 1.237595709366454, 1.5, 4.5, 0.3454406498093362, 2.296614238834169, 3.636082418468973, 0.1524559646784825, 0.4919770074209311, 0.7968306102546712, 8.785934892476236],
[1.086169679744439, 1.857693681187147, 8.5, 10.5, 0.3689606298169765, 7.825664956878501, 5.652169734081265, -0.2324063884106997, 0.822045856372055, 0.3185643687485593, 9.352132003171613],
[0.8205932341294105, 2.145608309559166, 4.166666666666666, 5.833333333333334, 0.2766478346272364, 5.077627371723573, 2.718731702960194, -0.2451996955861153, 0.9003226679616768, 0.259996119314031, 9.620304230495767],
[0.7743282893701507, 2.187499017757055, 4.5, 10.5, 0.2614360018583266, 5.811488565993581, 4.80000215532263, -0.1273981765269147, 0.7367587823350688, 0.4655195838221433, 7.939567411761661],
[0.8693409880350339, 2.032096083188356, 3, 6, 0.2996242781403757, 3.450889859433502, 2.952616290951168, -0.06495214449297973, 0.7305179482258224, 0.5361659451240114, 7.671395184437507],
[0.5724743742035958, 1.330156800226184, 1, 4, 0.3008856271763585, 1.746803079860406, 3.007164267641099, 0.1451590386677555, 0.5263981518042269, 0.8329905085559974, 8.682622862124669],
[0.896853467340785, 1.051597019412546, 0.5, 3.5, 0.4602906121752143, 0.5575046740718134, 3.328271129900317, 0.3191162969792388, 0.229572154636779, 0.9151523361120077, 8.682622862124669],
[0.574570641205868, 1.345536332573734, 1.333333333333333, 7.666666666666666, 0.2992388700484037, 2.32057337725267, 5.697851838754819, 0.3889698441509548, 0.2865282529867677, 0.9070463117134506, 8.682622862124669],
[0.6754296938776713, 1.233247711097254, 0.6666666666666666, 4.333333333333334, 0.3538731543199383, 0.9870259965020257, 3.513757450624294, 0.2910101583640555, 0.3182009826261344, 0.8873868961318421, 8.682622862124669],
[0.9048041640863548, 1.009529943207129, 2.5, 1.5, 0.4726469432055315, 2.763028840085443, 1.485840028909613, -0.1470971193217642, 0.8387313320083177, 0.4590113453598867, 8.682622862124669],
[0.4209075972226017, 1.087059843480711, 3, 3, 0.2791224703275365, 7.127455098923806, 2.759737670369784, -0.4980131525943176, 0.9448846681721657, 0.2180445078904052, 8.7702852942761],
[0.4050504619792241, 1.102916978724089, 1, 0, 0.2686069016120861, 2.468828192698845, 0, -0.281499188436905, 1, 0.268606901612086, 8.7702852942761],
[0.2217876449567569, 0.1957984567257801, 1, 0, 0.5311183587363913, 4.508817432977275, 0, -0.5849340630194303, 1, 0.5311183587363913, 7.708249045546697],
[0.1986325319130237, 0.2108361834351072, 1, 0, 0.4850981881342169, 5.034422057500005, 0, -0.6531213545063845, 1, 0.4850981881342169, 7.708249045546697],
[0.1019382340412585, 0.3156478676412785, 1, 0, 0.2441130910021411, 9.809861916925694, 0, -1.272644651069385, 1, 0.2441130910021411, 7.708249045546697],
[0.1310779808931062, 0.2865081207894308, 0, 1, 0.3138945007148635, 0, 3.490302464183729, 0.4528009465651852, 0.6861054992851365, 1, 7.708249045546697],
[0.1391953672275123, 0.2783907344550247, 0, 0, 0.3333333333333334, 0, 0, 0, 1, 1, 7.708249045546697],
[0.1751724222007837, 0.2258611611180603, 0, 0, 0.4368023763773217, 0, 0, 0, 1, 1, 7.708249045546697],
[0.1226428488638193, 0.2949432528187177, 0, 0, 0.2936947574875384, 0, 0, 0, 1, 1, 7.708249045546697],
[0, 0.417586101682537, 0, 0, 0, null, 0, null, 1, 1, 7.708249045546697],
[0.1310779808931062, 0.2865081207894308, 0, 1, 0.3138945007148635, 0, 3.490302464183729, 0.4528009465651852, 0.6861054992851365, 1, 7.708249045546697],
[0.1226428488638193, 0.2949432528187177, 0, 0, 0.2936947574875384, 0, 0, 0, 1, 1, 7.708249045546697],
[0.1299934190729449, 0.287592682609592, 1, 0, 0.3112972834804026, 7.692697115989055, 0, -0.9979824303203296, 1, 0.3112972834804026, 7.708249045546697],
[0.1226428488638193, 0.2949432528187177, 0, 0, 0.2936947574875384, 0, 0, 0, 1, 1, 7.708249045546697],
[0, 0.2180937426221927, 0, 0, 0, null, 0, null, 1, 1, 7.708249045546697],
[0.1019382340412584, 0.3011471933952464, 1, 1, 0.2528948632292494, 9.809861916925698, 3.320635297063954, -0.8418548209221105, 0.9360441881522592, 0.441833914610758, 7.708249045546697],
[0.1568385830799583, 0.2234992738778806, 1, 1, 0.4123664794623484, 6.37598211079341, 4.474287467020575, -0.2467090298375227, 0.8299538866158284, 0.6546868455405255, 7.708249045546697],
[0.1300665390756532, 0.2845135835324732, 0, 1, 0.3137307651351052, 0, 3.514770674862574, 0.4565059995117811, 0.6862692348648948, 1, 7.699286928586943],
[0.05215144102460437, 0.329579490906853, 0, 0, 0.1366183263188338, 0, 0, 0, 1, 1, 7.699286928586943],
[0.2201959539027223, 0.1943841687054042, 1, 0, 0.5311300322781227, 4.5414095140085, 0, -0.5898480672471819, 1, 0.5311300322781227, 7.699286928586943],
[0.05215144102460437, 0.2810055052675432, 0, 0, 0.1565371564513994, 0, 0, 0, 1, 1, 7.699286928586943],
[0.1217600085685477, 0.2928201140395789, 0, 0, 0.2936947574875384, 0, 0, 0, 1, 1, 7.699286928586943],
[0.1217600085685477, 0.2846932789125232, 0, 1, 0.2995670408354569, 0, 3.512552188867327, 0.4562178577636136, 0.7004329591645431, 1, 7.699286928586943],
[0.1217600085685477, 0.2928201140395789, 0, 0, 0.2936947574875384, 0, 0, 0, 1, 1, 7.699286928586943],
[0.05215144102460437, 0.329579490906853, 0, 0, 0.1366183263188338, 0, 0, 0, 1, 1, 7.699286928586943],
[0.1300249441178118, 0.2845551784903147, 1, 2, 0.3136304348115484, 7.690831992159362, 7.028513803933719, -0.08602331545360381, 0.7666077703966439, 0.6766491151728458, 7.699286928586943],
[0.1217600085685477, 0.2846932789125232, 0, 1, 0.2995670408354569, 0, 3.512552188867327, 0.4562178577636136, 0.7004329591645431, 1, 7.699286928586943],
[0.1026918050776333, 0.2972604362713541, 2, 3, 0.2567601689923454, 19.47575075234127, 10.09216038847985, -1.218760964605795, 0.8892263800924372, 0.3814449352544675, 7.699286928586943],
[0.118037598773706, 0.236075197547412, 1, 1, 0.3333333333333333, 8.471876845928852, 4.235938422964426, -0.4845458205387174, 0.8888888888888891, 0.5555555555555555, 8.742080198431834],
[0.04454505077865143, 0.3095677455424667, 0, 0, 0.1257933947641273, 0, 0, 0, 1, 1, 8.742080198431834]
]
}
}
},
"headers": [
["ES", "Expected synonymous sites"],
["EN", "Expected non-synonymous sites"],
["S", "Inferred synonymous substitutions"],
["N", "Inferred non-synonymous substitutions"],
["P[S]", "Expected proportion of synonymous sites"],
["dS", "Inferred synonymous susbsitution rate"],
["dN", "Inferred non-synonymous susbsitution rate"],
["dN-dS", "Scaled by the length of the tested branches"],
["P [dN/dS > 1]", "Binomial probability that S is no greater than the observed value, with Ps probability of success"],
["P [dN/dS < 1]", "Binomial probability that S is no less than the observed value, with Ps probability of success"],
["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"]
]
},
"analysis":{
"authors":"Sergei L Kosakovsky Pond and Simon DW Frost",
"citation":"Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection (2005). _Mol Biol Evol_ 22 (5): 1208-1222",
"contact":"spond@temple.edu",
"info":"SLAC (Single Likelihood Ancestor Counting)\n uses a maximum likelihood ancestral state reconstruction\n and minimum path substitution counting to estimate site - level\n dS and dN,\n and applies a simple binomial - based test to test\n if dS differs drom dN.\n The estimates aggregate information over all branches,\n so the signal is derived from\n pervasive diversification or conservation. A subset of branches can be selected\n for testing as well.\n Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
"requirements":"in-frame codon alignment and a phylogenetic tree",
"version":"2.00"
},
"branch attributes":{
"0":{
"Node10":{
"Global MG94xREV":0.0128533058216722,
"Nucleotide GTR":0.01681144351181631,
"amino-acid": [
["M", "I", "E", "L", "S", "L", "I", "D", "F", "Y", "L", "C", "F", "L", "A", "F", "L", "L", "F", "L", "V", "L", "I", "M", "L", "I", "I", "F", "W", "F", "S", "L", "E", "L", "Q", "D", "H", "N", "E", "I", "C", "S", "-", "-"]
],
"codon": [
["ATG", "ATT", "GAA", "CTT", "TCA", "TTA", "ATT", "GAC", "TTC", "TAT", "TTG", "TGC", "TTT", "TTA", "GCC", "TTT", "CTG", "CTA", "TTC", "CTT", "GTT", "TTA", "ATT", "ATG", "CTT", "ATT", "ATC", "TTT", "TGG", "TTC", "TCA", "CTT", "GAA", "CTG", "CAA", "GAT", "CAT", "AAT", "GAA", "ATC", "TGT", "TCT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0]
]
},
"Node11":{
"Global MG94xREV":1.062036248729403,
"Nucleotide GTR":1.389087185096855,
"amino-acid": [
["M", "I", "E", "F", "L", "L", "I", "A", "Y", "F", "L", "F", "F", "L", "D", "F", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ATG", "ATT", "GAA", "TTT", "TTA", "TTA", "ATA", "GCG", "TAC", "TTC", "TTG", "TTT", "TTT", "TTA", "GAT", "TTT", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 1, 1, 0, 0, 1.5, 1, 1, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 1, 0.5, 0, 1, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node19":{
"Global MG94xREV":0.2027630776805294,
"Nucleotide GTR":0.2652033705570671,
"amino-acid": [
["-", "-", "-", "-", "-", "F", "I", "D", "F", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "TTC", "ATT", "GAC", "TTC", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node21":{
"Global MG94xREV":0.9269017543435202,
"Nucleotide GTR":1.212338420974587,
"amino-acid": [
["-", "-", "-", "-", "-", "F", "I", "T", "L", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "TTT", "ATA", "ACA", "CTT", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 2.5, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 1, 1, 0.5, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node3":{
"Global MG94xREV":0.02046177412126886,
"Nucleotide GTR":0.02676291722641853,
"amino-acid": [
["V", "D", "D", "L", "C", "P", "I", "H", "F", "Y", "S", "K", "L", "L", "V", "F", "L", "L", "F", "F", "V", "L", "I", "M", "F", "I", "I", "F", "W", "Y", "L", "F", "E", "L", "Q", "D", "Y", "N", "E", "I", "Y", "Y", "V", "K"]
],
"codon": [
["GTT", "GAT", "GAC", "CTG", "TGT", "CCT", "ATT", "CAC", "TTC", "TAT", "TCT", "AAA", "TTA", "TTG", "GTT", "TTT", "TTG", "TTA", "TTT", "TTT", "GTT", "TTA", "ATT", "ATG", "TTT", "ATT", "ATT", "TTT", "TGG", "TAT", "TTA", "TTT", "GAA", "TTG", "CAA", "GAT", "TAT", "AAT", "GAA", "ATT", "TAT", "TAT", "GTT", "AAA"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node30":{
"Global MG94xREV":0.2446866767367061,
"Nucleotide GTR":0.3200372185276478,
"amino-acid": [
["-", "-", "-", "-", "-", "L", "I", "E", "L", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "TTA", "ATT", "GAA", "TTG", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node35":{
"Global MG94xREV":0.4025691818024323,
"Nucleotide GTR":0.5265391762528862,
"amino-acid": [
["V", "D", "D", "L", "C", "P", "I", "T", "L", "Y", "F", "K", "L", "L", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["GTT", "GAT", "GAT", "CTG", "TGT", "CCA", "ATT", "ACT", "TTA", "TAT", "TTT", "AAA", "TTA", "TTG", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 1, 0, 0, 0, 2, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 1, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node4":{
"Global MG94xREV":1.011432380788788,
"Nucleotide GTR":1.322900004991903,
"amino-acid": [
["M", "I", "E", "L", "S", "L", "I", "D", "F", "Y", "L", "C", "F", "L", "A", "F", "L", "L", "F", "L", "V", "L", "I", "M", "L", "I", "I", "F", "W", "F", "S", "L", "E", "L", "Q", "D", "H", "N", "E", "T", "C", "H", "A", "K"]
],
"codon": [
["ATG", "ATT", "GAA", "CTT", "TCA", "TTA", "ATT", "GAC", "TTC", "TAT", "TTG", "TGC", "TTT", "TTA", "GCC", "TTT", "CTG", "CTA", "TTC", "CTT", "GTT", "TTA", "ATT", "ATG", "CTT", "ATT", "ATC", "TTT", "TGG", "TTC", "TCA", "CTT", "GAA", "CTG", "CAA", "GAT", "CAT", "AAT", "GAA", "ACT", "TGT", "CAC", "GCC", "AAA"]
],
"nonsynonymous substitution count": [
[1.5, 2, 1, 0, 1, 2, 0, 1, 0, 0, 1.5, 3, 1, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 0]
],
"synonymous substitution count": [
[0.5, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0.5, 0, 0, 1, 1, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0]
]
},
"Node40":{
"Global MG94xREV":0.1443369071600548,
"Nucleotide GTR":0.1887850328201287,
"amino-acid": [
["V", "D", "D", "L", "C", "L", "I", "T", "L", "Y", "F", "K", "L", "L", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["GTT", "GAT", "GAT", "CTG", "TGT", "CTA", "ATT", "ACT", "TTA", "TAT", "TTT", "AAA", "TTA", "TTG", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node40_1":{
"amino-acid": [
["V", "D", "D", "P", "C", "P", "I", "H", "F", "Y", "S", "K", "L", "L", "V", "F", "L", "L", "F", "F", "V", "L", "I", "M", "F", "I", "I", "F", "W", "Y", "L", "F", "E", "L", "Q", "D", "Y", "N", "E", "I", "Y", "Y", "V", "K"]
],
"codon": [
["GTT", "GAT", "GAC", "CCG", "TGT", "CCT", "ATT", "CAC", "TTC", "TAT", "TCT", "AAA", "TTA", "TTG", "GTT", "TTT", "TTG", "TTA", "TTT", "TTT", "GTT", "TTA", "ATT", "ATG", "TTT", "ATT", "ATT", "TTT", "TGG", "TAT", "TTA", "TTT", "GAA", "TTG", "CAA", "GAT", "TAT", "AAT", "GAA", "ATT", "TAT", "TAT", "GTT", "AAA"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node41":{
"Global MG94xREV":0.5522689488334274,
"Nucleotide GTR":0.7223385458539918,
"amino-acid": [
["M", "K", "D", "L", "S", "L", "I", "I", "L", "R", "L", "G", "S", "P", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ATG", "AAA", "GAT", "CTC", "AGT", "CTA", "ATA", "ATA", "CTG", "CGT", "CTT", "GGT", "TCA", "CCG", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[1.5, 2, 0, 0, 1, 0, 0, 1, 0, 2, 1, 2.666666666666667, 1, 1.5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0.5, 0, 0, 1, 0, 0, 1, 1, 2, 0, 0, 0.3333333333333333, 0, 0.5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node42":{
"Global MG94xREV":0.1538344563428284,
"Nucleotide GTR":0.2012073243147943,
"amino-acid": [
["M", "K", "D", "L", "S", "P", "I", "I", "L", "R", "L", "G", "S", "P", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ATG", "AAA", "GAT", "CTC", "AGT", "CCA", "ATA", "ATA", "CTG", "CGT", "CTT", "GGT", "TCA", "CCG", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node9":{
"Global MG94xREV":0.01924297888451067,
"Nucleotide GTR":0.02516879758439747,
"amino-acid": [
["M", "I", "E", "L", "S", "L", "I", "D", "F", "Y", "L", "C", "F", "L", "A", "F", "L", "L", "F", "L", "V", "L", "I", "M", "L", "I", "I", "F", "W", "F", "S", "L", "E", "L", "Q", "D", "H", "N", "E", "T", "C", "S", "-", "-"]
],
"codon": [
["ATG", "ATT", "GAA", "CTT", "TCA", "TTA", "ATT", "GAC", "TTC", "TAT", "TTG", "TGC", "TTT", "TTA", "GCC", "TTT", "CTG", "CTA", "TTC", "CTT", "GTT", "TTA", "ATT", "ATG", "CTT", "ATT", "ATC", "TTT", "TGG", "TTC", "TCA", "CTT", "GAA", "CTG", "CAA", "GAT", "CAT", "AAT", "GAA", "ACT", "TGT", "TCT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0]
]
},
"epi_isl_413747_China_20200201_null_1":{
"Global MG94xREV":0.2903080492406604,
"Nucleotide GTR":0.3797075583937215,
"amino-acid": [
["-", "-", "-", "-", "-", "V", "I", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "GTC", "ATT", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_413747_China_20200201_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_424220_Washington_20200321_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "-", "-", "P", "I", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "CCA", "ATT", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_424220_Washington_20200321_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_428830_Singapore_20200227_null_16":{
"Global MG94xREV":0.008962116959753874,
"Nucleotide GTR":0.01172197449477568,
"amino-acid": [
["M", "I", "E", "L", "S", "L", "I", "D", "F", "Y", "L", "C", "F", "L", "A", "F", "L", "L", "F", "L", "V", "L", "I", "M", "L", "I", "I", "F", "W", "F", "S", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ATG", "ATT", "GAA", "CTT", "TCA", "TTA", "ATT", "GAC", "TTC", "TAT", "TTG", "TGC", "TTT", "TTA", "GCC", "TTT", "CTG", "CTA", "TTC", "CTT", "GTT", "TTA", "ATT", "ATG", "CTT", "ATT", "ATC", "TTT", "TGG", "TTC", "TCG", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_428830_Singapore_20200227_null_16",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_430896_Washington_20200329_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "-", "-", "F", "I", "T", "L", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "TTT", "ATA", "ACA", "CTT", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_430896_Washington_20200329_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_449433_England_20200327_null_2":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["V", "D", "D", "L", "C", "P", "I", "H", "F", "Y", "S", "K", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "W", "Y", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["GTT", "GAT", "GAC", "CTG", "TGT", "CCT", "ATT", "CAC", "TTC", "TAT", "TCT", "AAA", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "TGG", "TAT", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_449433_England_20200327_null_2",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_449506_England_20200331_null_2":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["V", "D", "D", "P", "C", "P", "I", "H", "F", "Y", "S", "K", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["GTT", "GAT", "GAC", "CCG", "TGT", "CCT", "ATT", "CAC", "TTC", "TAT", "TCT", "AAA", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_449506_England_20200331_null_2",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_450857_Florida_20200410_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["V", "D", "D", "P", "C", "P", "I", "H", "F", "Y", "S", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["GTT", "GAT", "GAC", "CCG", "TGT", "CCT", "ATT", "CAC", "TTC", "TAT", "TCT", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_450857_Florida_20200410_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_453320_England_20200410_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["V", "D", "D", "P", "C", "P", "I", "H", "F", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["GTT", "GAT", "GAC", "CCG", "TGT", "CCT", "ATT", "CAC", "TTC", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_453320_England_20200410_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_453338_England_20200411_null_6":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "-", "-", "P", "I", "H", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "CCT", "ATT", "CAC", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_453338_England_20200411_null_6",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_460625_Washington_20200331_null_2":{
"Global MG94xREV":0.1033120303515676,
"Nucleotide GTR":0.1351266659677497,
"amino-acid": [
["M", "K", "D", "L", "S", "P", "R", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ATG", "AAA", "GAT", "CTC", "AGT", "CCA", "AGA", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_460625_Washington_20200331_null_2",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_463896_Zhejiang_20200131_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "I", "E", "L", "S", "L", "I", "D", "F", "Y", "L", "C", "F", "L", "A", "F", "L", "L", "F", "L", "V", "L", "I", "M", "L", "I", "I", "F", "W", "F", "S", "L", "E", "L", "Q", "D", "H", "N", "E", "T", "C", "H", "A", "KQE"]
],
"codon": [
["ATG", "ATT", "GAA", "CTT", "TCA", "TTA", "ATT", "GAC", "TTC", "TAT", "TTG", "TGC", "TTT", "TTA", "GCC", "TTT", "CTG", "CTA", "TTC", "CTT", "GTT", "TTA", "ATT", "ATG", "CTT", "ATT", "ATC", "TTT", "TGG", "TTC", "TCA", "CTT", "GAA", "CTG", "CAA", "GAT", "CAT", "AAT", "GAA", "ACT", "TGT", "CAC", "GCC", "NAA"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2]
],
"original name":"epi_isl_463896_Zhejiang_20200131_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_472891_Wales_20200519_null_2":{
"Global MG94xREV":0.2681722273241533,
"Nucleotide GTR":0.3507550752815928,
"amino-acid": [
["-", "-", "-", "-", "-", "-", "M", "T", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "---", "ATG", "ACC", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_472891_Wales_20200519_null_2",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_477213_Karnataka_20200527_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "-", "-", "F", "I", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "TTT", "ATA", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_477213_Karnataka_20200527_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_477216_Karnataka_20200609_null_1":{
"Global MG94xREV":0.1430573555500244,
"Nucleotide GTR":0.1871114470585415,
"amino-acid": [
["-", "-", "-", "-", "-", "L", "I", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "CTG", "ATA", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_477216_Karnataka_20200609_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_477219_Karnataka_20200611_null_1":{
"Global MG94xREV":0.5195070001379307,
"Nucleotide GTR":0.6794876515025416,
"amino-acid": [
["-", "-", "-", "-", "-", "P", "V", "E", "L", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "CCG", "GTG", "GAA", "TTG", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 1.5, 1.5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_477219_Karnataka_20200611_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 1.5, 0.5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_477236_Karnataka_20200616_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "-", "-", "L", "I", "A", "Y", "F", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "TTA", "ATA", "GCG", "TAC", "TTC", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_477236_Karnataka_20200616_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_478427_England_20200401_null_3":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "I", "E", "L", "S", "L", "I", "D", "F", "Y", "L", "C", "F", "L", "A", "F", "L", "L", "F", "L", "V", "L", "I", "M", "L", "I", "I", "F", "W", "F", "S", "L", "E", "L", "Q", "D", "H", "N", "E", "T", "C", "S", "-", "-"]
],
"codon": [
["ATG", "ATT", "GAA", "CTT", "TCA", "TTA", "ATT", "GAC", "TTC", "TAT", "TTG", "TGC", "TTT", "TTA", "GCC", "TTT", "CTG", "CTA", "TTC", "CTT", "GTT", "TTA", "ATT", "ATG", "CTT", "ATT", "ATC", "TTT", "TGG", "TTC", "TCA", "CTT", "GAA", "CTG", "CAA", "GAT", "CAT", "AAT", "GAA", "ACT", "TGT", "TCT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_478427_England_20200401_null_3",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_479738_Karnataka_20200602_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "-", "-", "L", "I", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "CTA", "ATT", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_479738_Karnataka_20200602_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_479751_Karnataka_20200617_null_1":{
"Global MG94xREV":2.273446084510415,
"Nucleotide GTR":2.973547113650988,
"amino-acid": [
["Y", "K", "P", "H", "S", "L", "S", "D", "G", "L", "L", "L", "A", "L", "H", "F", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["TAC", "AAG", "CCT", "CAC", "TCC", "CTT", "TCG", "GAT", "GGC", "TTA", "TTG", "TTG", "GCG", "TTG", "CAC", "TTC", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[3, 2, 2.5, 2, 1.5, 1, 2.333333333333333, 1.5, 2, 1, 0, 1, 2.333333333333333, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_479751_Karnataka_20200617_null_1",
"synonymous substitution count": [
[0, 0, 0.5, 1, 0.5, 1, 0.6666666666666666, 0.5, 0, 0, 0, 0, 0.6666666666666666, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_479752_Karnataka_20200617_null_1":{
"Global MG94xREV":0.1160922915842698,
"Nucleotide GTR":0.1518425710244518,
"amino-acid": [
["-", "-", "-", "-", "-", "P", "I", "T", "L", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "CCC", "ATT", "ACT", "TTA", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_479752_Karnataka_20200617_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_486362_California_20200521_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "I", "E", "L", "S", "L", "I", "D", "F", "Y", "L", "C", "F", "L", "A", "F", "L", "L", "F", "L", "V", "L", "I", "M", "L", "I", "I", "F", "W", "F", "S", "L", "E", "L", "Q", "D", "H", "N", "E", "T", "C", "H", "A", "Y"]
],
"codon": [
["ATG", "ATT", "GAA", "CTT", "TCA", "TTA", "ATT", "GAC", "TTC", "TAT", "TTG", "TGC", "TTT", "TTA", "GCC", "TTT", "CTG", "CTA", "TTC", "CTT", "GTT", "TTA", "ATT", "ATG", "CTT", "ATT", "ATC", "TTT", "TGG", "TTC", "TCA", "CTT", "GAA", "CTG", "CAA", "GAT", "CAT", "AAT", "GAA", "ACT", "TGT", "CAC", "GCC", "TAN"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 4]
],
"original name":"epi_isl_486362_California_20200521_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_489824_Florida_20200515_null_1":{
"Global MG94xREV":0.127769936468002,
"Nucleotide GTR":0.1671163122734072,
"amino-acid": [
["-", "-", "-", "-", "-", "Q", "I", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "CAA", "ATT", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_489824_Florida_20200515_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_490842_Wales_20200406_null_7":{
"Global MG94xREV":1.016289447123851,
"Nucleotide GTR":1.329252790606586,
"amino-acid": [
["-", "-", "-", "-", "-", "Y", "I", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "TAT", "ATT", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_490842_Wales_20200406_null_7",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_494337_Wales_20200521_null_10":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "I", "E", "L", "S", "L", "I", "D", "F", "Y", "L", "C", "F", "L", "A", "F", "L", "L", "F", "L", "V", "L", "I", "M", "L", "I", "I", "F", "W", "F", "S", "L", "E", "L", "Q", "D", "H", "N", "E", "I", "C", "S", "-", "-"]
],
"codon": [
["ATG", "ATT", "GAA", "CTT", "TCA", "TTA", "ATT", "GAC", "TTC", "TAT", "TTG", "TGC", "TTT", "TTA", "GCC", "TTT", "CTG", "CTA", "TTC", "CTT", "GTT", "TTA", "ATT", "ATG", "CTT", "ATT", "ATC", "TTT", "TGG", "TTC", "TCA", "CTT", "GAA", "CTG", "CAA", "GAT", "CAT", "AAT", "GAA", "ATC", "TGT", "TCT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_494337_Wales_20200521_null_10",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_496661_Panama_Center_20200309_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "-", "-", "P", "I", "I", "L", "R", "L", "G", "S", "P", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "CCA", "ATA", "ATA", "CTG", "CGT", "CTT", "GGT", "TCA", "CCG", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_496661_Panama_Center_20200309_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_496779_Panama_West_20200330_null_3":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "-", "-", "P", "I", "I", "L", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "CCA", "ATA", "ATA", "CTG", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_496779_Panama_West_20200330_null_3",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_508833_Florida_20200406_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "-", "-", "L", "I", "E", "L", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "TTA", "ATT", "GAA", "TTG", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_508833_Florida_20200406_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_521889_Victoria_20200326_null_13":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "I", "E", "L", "S", "L", "I", "D", "F", "Y", "L", "C", "F", "L", "A", "F", "L", "L", "F", "L", "V", "L", "I", "M", "L", "I", "I", "F", "W", "F", "S", "L", "E", "L", "Q", "D", "H", "N", "E", "T", "C", "H", "A", "-"]
],
"codon": [
["ATG", "ATT", "GAA", "CTT", "TCA", "TTA", "ATT", "GAC", "TTC", "TAT", "TTG", "TGC", "TTT", "TTA", "GCC", "TTT", "CTG", "CTA", "TTC", "CTT", "GTT", "TTA", "ATT", "ATG", "CTT", "ATT", "ATC", "TTT", "TGG", "TTC", "TCA", "CTT", "GAA", "CTG", "CAA", "GAT", "CAT", "AAT", "GAA", "ACT", "TGT", "CAC", "GCC", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_521889_Victoria_20200326_null_13",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
}
},
"attributes":{
"Global MG94xREV":{
"attribute type":"branch length",
"display order":1
},
"Nucleotide GTR":{
"attribute type":"branch length",
"display order":0
},
"amino-acid":{
"attribute type":"node label",
"display order":1
},
"codon":{
"attribute type":"node label",
"display order":0
},
"nonsynonymous substitution count":{
"attribute type":"branch label",
"display order":1
},
"original name":{
"attribute type":"node label",
"display order":-1
},
"synonymous substitution count":{
"attribute type":"branch label",
"display order":0
}
}
},
"data partitions":{
"0":{
"coverage": [
[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43]
],
"name":"slac.filter.default"
}
},
"fits":{
"Global MG94xREV":{
"AIC-c":inf,
"Equilibrium frequencies": [
[0.0145098745592581],
[0.01125767762065347],
[0.009805897417293851],
[0.02299807450380149],
[0.007822824495932945],
[0.006069441599822279],
[0.005286731749976904],
[0.01239913548893066],
[0.004347472819388455],
[0.003373044147649139],
[0.002938059341401792],
[0.00689072144595162],
[0.02940723717498517],
[0.02281599296245098],
[0.0198736625796632],
[0.04661031552955408],
[0.01519012972197283],
[0.01178546256395895],
[0.01026561967856654],
[0.02407627534212141],
[0.008189575891931351],
[0.00635399050933992],
[0.005534585482421133],
[0.01298043451361194],
[0.004551292005975703],
[0.003531179952761183],
[0.00307580209218771],
[0.007213773779677473],
[0.0307859138015654],
[0.02388565741349664],
[0.0208053840440118],
[0.04879551069752411],
[0.01120842007259979],
[0.008696200597659855],
[0.007574746218031437],
[0.01776528658788998],
[0.006042884984742651],
[0.004688452045473685],
[0.004083833393796173],
[0.009577940769194401],
[0.003358285518934706],
[0.002605570129216123],
[0.002269558097292122],
[0.005322864801764836],
[0.02271616243722094],
[0.01762463434485452],
[0.0153517770029131],
[0.03600499742696438],
[0.02059085236587178],
[0.04206462227505217],
[0.01430833513871136],
[0.01110131060210328],
[0.009669695351910649],
[0.02267863558720317],
[0.006169465533494258],
[0.005373856685146676],
[0.01260347229411072],
[0.05378729961563312],
[0.04173158607852613],
[0.03634991744622741],
[0.08525258566962224]
],
"Log Likelihood":-inf,
"Rate Distributions":{
"non-synonymous/synonymous rate ratio for *test*": [
[0.9165418920175951, 1]
]
},
"display order":1,
"estimated parameters":55
},
"Nucleotide GTR":{
"AIC-c":inf,
"Equilibrium frequencies": [
[0.2269021739130435],
[0.1951992753623188],
[0.1354166666666667],
[0.442481884057971]
],
"Log Likelihood":-480.3795741718149,
"Rate Distributions":{
"Substitution rate from nucleotide A to nucleotide C":1.144557892586345,
"Substitution rate from nucleotide A to nucleotide G":1,
"Substitution rate from nucleotide A to nucleotide T":0,
"Substitution rate from nucleotide C to nucleotide G":0.07413878707359008,
"Substitution rate from nucleotide C to nucleotide T":0.8743417086541311,
"Substitution rate from nucleotide G to nucleotide T":0.1701018848916214
},
"display order":0,
"estimated parameters":61
}
},
"input":{
"file name":"/data/shares/veg/SARS-CoV-2/SARS-CoV-2/data/fasta/2020-09-08/sequences.ORF7b.compressed.fas",
"number of sequences":28,
"number of sites":44,
"partition count":1,
"trees":{
"0":"(epi_isl_453320_England_20200410_null_1,epi_isl_453338_England_20200411_null_6,epi_isl_449506_England_20200331_null_2,(((epi_isl_477219_Karnataka_20200611_null_1,epi_isl_508833_Florida_20200406_null_1)Node30,epi_isl_463896_Zhejiang_20200131_null_1,(epi_isl_490842_Wales_20200406_null_7,(epi_isl_477213_Karnataka_20200527_null_1,epi_isl_430896_Washington_20200329_null_1,epi_isl_472891_Wales_20200519_null_2)Node21,epi_isl_413747_China_20200201_null_1)Node19,epi_isl_486362_California_20200521_null_1,epi_isl_521889_Victoria_20200326_null_13,(((epi_isl_477236_Karnataka_20200616_null_1,epi_isl_479751_Karnataka_20200617_null_1)Node11,epi_isl_494337_Wales_20200521_null_10)Node10,epi_isl_478427_England_20200401_null_3)Node9,epi_isl_428830_Singapore_20200227_null_16)Node4,epi_isl_449433_England_20200327_null_2)Node3,(epi_isl_479752_Karnataka_20200617_null_1,epi_isl_489824_Florida_20200515_null_1,(((epi_isl_460625_Washington_20200331_null_2,epi_isl_496661_Panama_Center_20200309_null_1,epi_isl_496779_Panama_West_20200330_null_3)Node42,epi_isl_477216_Karnataka_20200609_null_1)Node41,epi_isl_479738_Karnataka_20200602_null_1)Node40,epi_isl_424220_Washington_20200321_null_1)Node35,epi_isl_450857_Florida_20200410_null_1)"
}
},
"tested":{
"0":{
"Node10":"test",
"Node11":"test",
"Node19":"test",
"Node21":"test",
"Node3":"test",
"Node30":"test",
"Node35":"test",
"Node4":"test",
"Node40":"test",
"Node41":"test",
"Node42":"test",
"Node9":"test",
"epi_isl_413747_China_20200201_null_1":"test",
"epi_isl_424220_Washington_20200321_null_1":"test",
"epi_isl_428830_Singapore_20200227_null_16":"test",
"epi_isl_430896_Washington_20200329_null_1":"test",
"epi_isl_449433_England_20200327_null_2":"test",
"epi_isl_449506_England_20200331_null_2":"test",
"epi_isl_450857_Florida_20200410_null_1":"test",
"epi_isl_453320_England_20200410_null_1":"test",
"epi_isl_453338_England_20200411_null_6":"test",
"epi_isl_460625_Washington_20200331_null_2":"test",
"epi_isl_463896_Zhejiang_20200131_null_1":"test",
"epi_isl_472891_Wales_20200519_null_2":"test",
"epi_isl_477213_Karnataka_20200527_null_1":"test",
"epi_isl_477216_Karnataka_20200609_null_1":"test",
"epi_isl_477219_Karnataka_20200611_null_1":"test",
"epi_isl_477236_Karnataka_20200616_null_1":"test",
"epi_isl_478427_England_20200401_null_3":"test",
"epi_isl_479738_Karnataka_20200602_null_1":"test",
"epi_isl_479751_Karnataka_20200617_null_1":"test",
"epi_isl_479752_Karnataka_20200617_null_1":"test",
"epi_isl_486362_California_20200521_null_1":"test",
"epi_isl_489824_Florida_20200515_null_1":"test",
"epi_isl_490842_Wales_20200406_null_7":"test",
"epi_isl_494337_Wales_20200521_null_10":"test",
"epi_isl_496661_Panama_Center_20200309_null_1":"test",
"epi_isl_496779_Panama_West_20200330_null_3":"test",
"epi_isl_508833_Florida_20200406_null_1":"test",
"epi_isl_521889_Victoria_20200326_null_13":"test"
}
},
"timers":{
"Model fitting":{
"order":1,
"timer":1
},
"Primary SLAC analysis":{
"order":2,
"timer":2
},
"Total time":{
"order":0,
"timer":6
}
}
}