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]
}
}
},
"headers": [
["ES", "Expected synonymous sites"],
["EN", "Expected non-synonymous sites"],
["S", "Inferred synonymous substitutions"],
["N", "Inferred non-synonymous substitutions"],
["P[S]", "Expected proportion of synonymous sites"],
["dS", "Inferred synonymous susbsitution rate"],
["dN", "Inferred non-synonymous susbsitution rate"],
["dN-dS", "Scaled by the length of the tested branches"],
["P [dN/dS > 1]", "Binomial probability that S is no greater than the observed value, with Ps probability of success"],
["P [dN/dS < 1]", "Binomial probability that S is no less than the observed value, with Ps probability of success"],
["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"]
]
},
"analysis":{
"authors":"Sergei L Kosakovsky Pond and Simon DW Frost",
"citation":"Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection (2005). _Mol Biol Evol_ 22 (5): 1208-1222",
"contact":"spond@temple.edu",
"info":"SLAC (Single Likelihood Ancestor Counting)\n uses a maximum likelihood ancestral state reconstruction\n and minimum path substitution counting to estimate site - level\n dS and dN,\n and applies a simple binomial - based test to test\n if dS differs drom dN.\n The estimates aggregate information over all branches,\n so the signal is derived from\n pervasive diversification or conservation. A subset of branches can be selected\n for testing as well.\n Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
"requirements":"in-frame codon alignment and a phylogenetic tree",
"version":"2.00"
},
"branch attributes":{
"0":{
"Node1":{
"Global MG94xREV":0.0002484889183495401,
"Nucleotide GTR":0.0002473731312835514,
"amino-acid": [
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"Nucleotide GTR":0.000667080670919002,
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"Node763":{
"Global MG94xREV":0.0004093283128208326,
"Nucleotide GTR":0.0004074903103850618,
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],
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],
"original name":"epi_isl_414448_Limburg_20200304_null_1",
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},
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"Global MG94xREV":0.0006698863678942942,
"Nucleotide GTR":0.0006668783844802122,
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"Nucleotide GTR":0.001334109771500718,
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],
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],
"original name":"epi_isl_414567_Hong_Kong_20200210_null_1",
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},
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"Global MG94xREV":0.0006703498796078842,
"Nucleotide GTR":0.0006673398148922362,
"amino-acid": [
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"Nucleotide GTR":0.000666943230826531,
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],
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],
"original name":"epi_isl_415479_Netherlands_20200308_null_1",
"synonymous substitution count": [
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},
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"Global MG94xREV":0.0006703517362746814,
"Nucleotide GTR":0.0006673416632220625,
"amino-acid": [
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"Nucleotide GTR":0.0006670749453503561,
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],
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],
"original name":"epi_isl_416339_Shanghai_20200203_null_1",
"synonymous substitution count": [
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},
"epi_isl_416365_Shanghai_20200130_null_1":{
"Global MG94xREV":0.0006698579473307687,
"Nucleotide GTR":0.0006668500915332307,
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"Nucleotide GTR":0.0006673556181150049,
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],
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],
"original name":"epi_isl_416415_Victoria_20200208_null_1",
"synonymous substitution count": [
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},
"epi_isl_416429_Vinhphuc_20200211_null_1":{
"Global MG94xREV":0.0006700461723342996,
"Nucleotide GTR":0.0006670374713520921,
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"Nucleotide GTR":0.0002506300719268999,
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],
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],
"original name":"epi_isl_416680_Washington_20200311_null_1",
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},
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"Global MG94xREV":0.0006695866373794654,
"Nucleotide GTR":0.0006665799998420281,
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"Nucleotide GTR":0.0006668500915332307,
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"Nucleotide GTR":0.0006668783844244662,
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],
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],
"original name":"epi_isl_417359_Washington_20200314_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_417367_Washington_20200313_null_2":{
"Global MG94xREV":0.0006703497212098942,
"Nucleotide GTR":0.0006673396572054985,
"amino-acid": [
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_417484_Oslo_20200226_null_1",
"synonymous substitution count": [
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},
"epi_isl_417690_Reykjavik_20200311_null_1":{
"Global MG94xREV":0.0006699515067268687,
"Nucleotide GTR":0.0006669432308206008,
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],
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],
"original name":"epi_isl_418769_England_20200318_null_1",
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},
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"Global MG94xREV":0.0006700605103855018,
"Nucleotide GTR":0.0006670517450213006,
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"Nucleotide GTR":0.0006667134080357535,
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],
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],
"original name":"epi_isl_419243_Hong_Kong_20200222_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_419244_Hong_Kong_20200222_null_1":{
"Global MG94xREV":0.0006701396650302011,
"Nucleotide GTR":0.0006671305442387666,
"amino-acid": [
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"Nucleotide GTR":0.0006671805750038419,
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],
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],
"original name":"epi_isl_419252_Hong_Kong_20200226_null_1",
"synonymous substitution count": [
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},
"epi_isl_419400_Wales_20200316_null_1":{
"Global MG94xREV":0.0006696589078347704,
"Nucleotide GTR":0.0006666519457820999,
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],
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],
"original name":"epi_isl_419737_Victoria_20200307_null_1",
"synonymous substitution count": [
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},
"epi_isl_419811_Victoria_20200316_null_1":{
"Global MG94xREV":0.0006699285928144931,
"Nucleotide GTR":0.000666920419798315,
"amino-acid": [
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],
"original name":"epi_isl_420111_Singapore_20200312_null_1",
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},
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"Global MG94xREV":0.0006700974095512985,
"Nucleotide GTR":0.0006670884784991782,
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_420567_Abruzzo_20200321_null_1",
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},
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"Nucleotide GTR":0.0006673363382996895,
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"Nucleotide GTR":0.001335030682332446,
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],
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],
"original name":"epi_isl_421243_Jiangxi_20200121_null_1",
"synonymous substitution count": [
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},
"epi_isl_421511_Hauts_de_France_20200323_null_2":{
"Global MG94xREV":0.0006698138312581287,
"Nucleotide GTR":0.0006668061735545084,
"amino-acid": [
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"Nucleotide GTR":0.0006673239884974433,
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],
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],
"original name":"epi_isl_421665_India_20200310_null_1",
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},
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"Global MG94xREV":0.0006700688639605217,
"Nucleotide GTR":0.0006670600610863545,
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],
"original name":"epi_isl_421843_England_20200324_null_1",
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},
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"Nucleotide GTR":0.0006671688958798071,
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"Nucleotide GTR":0.0002474146520472963,
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"Nucleotide GTR":0.0006669983231675987,
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],
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],
"original name":"epi_isl_422369_Wales_20200326_null_1",
"synonymous substitution count": [
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},
"epi_isl_422406_Greater_Accra_20200329_null_1":{
"Global MG94xREV":0.000670349729063341,
"Nucleotide GTR":0.0006673396650236813,
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"Nucleotide GTR":0.0006668783844244662,
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],
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],
"original name":"epi_isl_422899_Utrecht_20200303_null_1",
"synonymous substitution count": [
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},
"epi_isl_422952_Zuid_Holland_20200327_null_1":{
"Global MG94xREV":0.0006699320362941427,
"Nucleotide GTR":0.0006669238478157456,
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],
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],
"original name":"epi_isl_423203_England_20200324_null_1",
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},
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"Nucleotide GTR":0.0006677891877114368,
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"Nucleotide GTR":0.0002469095332060795,
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"Nucleotide GTR":0.0006668835040292255,
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],
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],
"original name":"epi_isl_424579_Reykjavik_20200326_null_1",
"synonymous substitution count": [
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},
"epi_isl_424613_Reykjavik_20200327_null_1":{
"Global MG94xREV":0.0006698863678382964,
"Nucleotide GTR":0.0006668783844244662,
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"Nucleotide GTR":0.0006673416744612463,
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],
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],
"original name":"epi_isl_424982_Michigan_20200310_null_2",
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},
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"Global MG94xREV":0.0006701514629912155,
"Nucleotide GTR":0.0006671422892235259,
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"Nucleotide GTR":0.0002459876631936775,
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],
"original name":"epi_isl_426421_Hawaii_20200307_null_1",
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},
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"Global MG94xREV":0.0006700545900795283,
"Nucleotide GTR":0.0006670458512992121,
"amino-acid": [
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],
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],
"original name":"epi_isl_426770_Victoria_20200323_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_426773_Victoria_20200322_null_2":{
"Global MG94xREV":0.0006700867762819726,
"Nucleotide GTR":0.0006670778929763043,
"amino-acid": [
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"original name":"epi_isl_426815_Victoria_20200325_null_1",
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],
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],
"original name":"epi_isl_426830_Victoria_20200325_null_8",
"synonymous substitution count": [
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},
"epi_isl_427219_Washington_20200327_null_1":{
"Global MG94xREV":0.001339907692516921,
"Nucleotide GTR":0.001333891119694039,
"amino-acid": [
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],
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],
"original name":"epi_isl_427570_New_York_20200315_null_1",
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},
"epi_isl_427621_Alaska_20200325_null_1":{
"Global MG94xREV":0.0006699515066803555,
"Nucleotide GTR":0.0006669432307742958,
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"Nucleotide GTR":0.0006673482518506573,
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],
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],
"original name":"epi_isl_427807_New_South_Wales_20200323_null_1",
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},
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"Global MG94xREV":0.0006701910456046894,
"Nucleotide GTR":0.0006671816940996239,
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"Nucleotide GTR":0.0006671971990265481,
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],
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],
"original name":"epi_isl_428940_Luxembourg_20200402_null_4",
"synonymous substitution count": [
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]
},
"epi_isl_428952_Luxembourg_20200401_null_1":{
"Global MG94xREV":0.0002485385911337777,
"Nucleotide GTR":0.0002474225810226309,
"amino-acid": [
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],
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],
"original name":"epi_isl_429060_California_20200331_null_1",
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},
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"Global MG94xREV":0.0006700892697888957,
"Nucleotide GTR":0.0006670803752866607,
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_429235_Abruzzo_20200324_null_1",
"synonymous substitution count": [
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},
"epi_isl_429598_Washington_20200331_null_1":{
"Global MG94xREV":0.001341178980039952,
"Nucleotide GTR":0.001335156698768643,
"amino-acid": [
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"Nucleotide GTR":0.000667236023510242,
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],
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],
"original name":"epi_isl_429688_Minas_gerais_20200317_null_2",
"synonymous substitution count": [
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},
"epi_isl_430151_Washington_20200313_null_2":{
"Global MG94xREV":0.0006701681497460252,
"Nucleotide GTR":0.0006671589010499833,
"amino-acid": [
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"Nucleotide GTR":0,
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"Nucleotide GTR":0.0006670742701522466,
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],
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],
"original name":"epi_isl_430600_Victoria_20200408_null_2",
"synonymous substitution count": [
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},
"epi_isl_430654_Victoria_20200327_null_2":{
"Global MG94xREV":0.0006697600789577146,
"Nucleotide GTR":0.0006667526626174602,
"amino-acid": [
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"Nucleotide GTR":0.0006669015429974762,
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],
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],
"original name":"epi_isl_430729_Beijing_20200207_null_1",
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},
"epi_isl_430737_Beijing_20200225_null_1":{
"Global MG94xREV":0.0006701635077739549,
"Nucleotide GTR":0.0006671542799217093,
"amino-acid": [
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],
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],
"original name":"epi_isl_430980_Washington_20200403_null_1",
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},
"epi_isl_431084_Connecticut_20200411_null_1":{
"Global MG94xREV":0.0002484586824068975,
"Nucleotide GTR":0.0002473430311090305,
"amino-acid": [
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],
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],
"original name":"epi_isl_432133_Wales_20200404_null_2",
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},
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"Global MG94xREV":0.0006700214371020904,
"Nucleotide GTR":0.0006670128471882249,
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"Nucleotide GTR":0,
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],
"original name":"epi_isl_432409_Wales_20200403_null_1",
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},
"epi_isl_432445_Wales_20200331_null_1":{
"Global MG94xREV":0.0006699926804568149,
"Nucleotide GTR":0.0006669842196685992,
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"Nucleotide GTR":0.0006669204197440452,
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],
"original name":"epi_isl_433140_Scotland_20200416_null_1",
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},
"epi_isl_433202_Scotland_20200401_null_1":{
"Global MG94xREV":0.0006706138628120501,
"Nucleotide GTR":0.0006676026127355135,
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"Nucleotide GTR":0.0002469095332267112,
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],
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],
"original name":"epi_isl_433647_Scotland_20200405_null_1",
"synonymous substitution count": [
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},
"epi_isl_433733_England_20200405_null_2":{
"Global MG94xREV":0.0006702698820954724,
"Nucleotide GTR":0.0006672601765917773,
"amino-acid": [
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"Nucleotide GTR":0.0006671168929847003,
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"Nucleotide GTR":0.001334903502107471,
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],
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],
"original name":"epi_isl_434365_Ghent_20200330_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_434456_Athens_20200322_null_2":{
"Global MG94xREV":0.0006707056488586702,
"Nucleotide GTR":0.0006676939866362554,
"amino-acid": [
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"Nucleotide GTR":0.0006666519457820999,
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],
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],
"original name":"epi_isl_434553_Puerto_Rico_20200401_null_1",
"synonymous substitution count": [
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},
"epi_isl_434628_Occitanie_20200407_null_7":{
"Global MG94xREV":0.0006699096308502772,
"Nucleotide GTR":0.0006669015429787997,
"amino-acid": [
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"Nucleotide GTR":0.0006673112602134176,
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],
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],
"original name":"epi_isl_434891_Texas_20200324_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_434997_Texas_20200331_null_1":{
"Global MG94xREV":0.0006699290497649028,
"Nucleotide GTR":0.0006669208746968854,
"amino-acid": [
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],
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],
"original name":"epi_isl_435073_Delhi_20200326_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_435079_Tamil_Nadu_20200329_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
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"original name":"epi_isl_435091_Tamil_Nadu_20200328_null_1",
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},
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_435099_Uttar_Pradesh_20200329_null_4",
"synonymous substitution count": [
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]
},
"epi_isl_435316_Hanoi_20200317_null_1":{
"Global MG94xREV":0.0006699489214675017,
"Nucleotide GTR":0.000666940657169796,
"amino-acid": [
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],
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],
"original name":"epi_isl_435491_New_York_20200422_null_1",
"synonymous substitution count": [
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},
"epi_isl_435596_California_20200304_null_2":{
"Global MG94xREV":0.0006700177431411199,
"Nucleotide GTR":0.0006670091698142075,
"amino-acid": [
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],
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],
"original name":"epi_isl_435674_Brunei_20200311_null_1",
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},
"epi_isl_435685_Singapore_20200411_null_1":{
"Global MG94xREV":0.0006697888590597658,
"Nucleotide GTR":0.0006667813134885345,
"amino-acid": [
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_436121_Victoria_20200411_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_436196_Comunitat_Valenciana_20200315_null_1":{
"Global MG94xREV":0.0006705407261268956,
"Nucleotide GTR":0.0006675298044552158,
"amino-acid": [
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"Nucleotide GTR":0.0006668783844802122,
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],
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],
"original name":"epi_isl_436378_Comunitat_Valenciana_20200317_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_436395_Comunitat_Valenciana_20200317_null_1":{
"Global MG94xREV":0.0006705681832652127,
"Nucleotide GTR":0.0006675571383030452,
"amino-acid": [
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"original name":"epi_isl_436414_West_Bengal_20200331_null_1",
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_436418_Tamil_Nadu_20200331_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_436421_Assam_20200331_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_436441_Bihar_20200409_null_1",
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},
"epi_isl_436454_Delhi_20200413_null_1":{
"Global MG94xREV":0.0006700974095512985,
"Nucleotide GTR":0.0006670884784991782,
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"Nucleotide GTR":0.0002474225887429336,
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"Nucleotide GTR":0,
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"Nucleotide GTR":0.0006667526626174602,
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],
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],
"original name":"epi_isl_437009_Unknown_20200326_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_437093_Latvia_20200322_null_3":{
"Global MG94xREV":0.0006699007748965081,
"Nucleotide GTR":0.0006668927267908215,
"amino-acid": [
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"Nucleotide GTR":0.0006670655401715464,
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],
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],
"original name":"epi_isl_437245_Bavaria_20200311_null_2",
"synonymous substitution count": [
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]
},
"epi_isl_437294_Bavaria_20200410_null_1":{
"Global MG94xREV":0.0006698444322289597,
"Nucleotide GTR":0.0006668366371181365,
"amino-acid": [
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"Nucleotide GTR":0.0006669512627820965,
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],
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],
"original name":"epi_isl_437334_Ankara_20200324_null_5",
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},
"epi_isl_437524_Oregon_20200416_null_1":{
"Global MG94xREV":0.0006697600789582005,
"Nucleotide GTR":0.0006667526626179435,
"amino-acid": [
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"Nucleotide GTR":0.0006673435800554971,
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],
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],
"original name":"epi_isl_437727_Makkah_20200416_null_3",
"synonymous substitution count": [
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},
"epi_isl_437786_Virginia_20200408_null_1":{
"Global MG94xREV":0.0006697716237084771,
"Nucleotide GTR":0.0006667641555289549,
"amino-acid": [
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"Nucleotide GTR":0.0006669432307742958,
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_438335_England_20200328_null_1",
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},
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"Global MG94xREV":0.0006701402224693743,
"Nucleotide GTR":0.0006671310991748767,
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"Nucleotide GTR":0.0006668742834499194,
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],
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],
"original name":"epi_isl_438451_England_20200330_null_1",
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},
"epi_isl_438654_England_20200423_null_1":{
"Global MG94xREV":0.0006700198526942951,
"Nucleotide GTR":0.0006670112698948795,
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"Nucleotide GTR":0.0006670074863728287,
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],
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],
"original name":"epi_isl_438899_Scotland_20200413_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_438910_Scotland_20200414_null_2":{
"Global MG94xREV":0.0006700688639581353,
"Nucleotide GTR":0.0006670600610839788,
"amino-acid": [
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"Nucleotide GTR":0.0006670038534941396,
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],
"original name":"epi_isl_438986_Scotland_20200420_null_1",
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},
"epi_isl_439115_Scotland_20200327_null_1":{
"Global MG94xREV":0.0006698444322289597,
"Nucleotide GTR":0.0006668366371181365,
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"Nucleotide GTR":0,
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],
"original name":"epi_isl_439341_Scotland_20200430_null_1",
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},
"epi_isl_439357_Scotland_20200501_null_1":{
"Global MG94xREV":0.0006699453367064815,
"Nucleotide GTR":0.0006669370885053884,
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"Nucleotide GTR":0.0006669842196707095,
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],
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],
"original name":"epi_isl_439562_England_20200323_null_1",
"synonymous substitution count": [
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},
"epi_isl_439648_England_20200322_null_4":{
"Global MG94xREV":0.0006698444322289597,
"Nucleotide GTR":0.0006668366371181365,
"amino-acid": [
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],
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],
"original name":"epi_isl_439661_England_20200327_null_2",
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},
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"Nucleotide GTR":0.000667685798749898,
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],
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],
"original name":"epi_isl_439878_England_20200323_null_1",
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},
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"Nucleotide GTR":0.0006668366371717707,
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],
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],
"original name":"epi_isl_439985_England_20200322_null_1",
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},
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"Global MG94xREV":0.0006700974094993504,
"Nucleotide GTR":0.0006670884784474628,
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"Nucleotide GTR":0.0006667526626174602,
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],
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],
"original name":"epi_isl_440088_England_20200321_null_3",
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},
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"Nucleotide GTR":0.0006676513067791517,
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"Nucleotide GTR":0.0002469095262531657,
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],
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],
"original name":"epi_isl_440785_England_20200402_null_1",
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},
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"Nucleotide GTR":0.0006674076670843299,
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"Nucleotide GTR":0.0006667669964971533,
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],
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],
"original name":"epi_isl_441277_England_20200402_null_1",
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},
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"Nucleotide GTR":0.0002466108676462632,
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"Nucleotide GTR":0.0006667843465694351,
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],
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],
"original name":"epi_isl_441352_England_20200420_null_1",
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},
"epi_isl_441393_Northern_Ireland_20200311_null_1":{
"Global MG94xREV":0.0002623736336822362,
"Nucleotide GTR":0.0002611955002312014,
"amino-acid": [
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"original name":"epi_isl_441756_England_20200405_null_1",
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_441832_England_20200403_null_4",
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},
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"Global MG94xREV":0.002681341543525296,
"Nucleotide GTR":0.002669301544986789,
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"Nucleotide GTR":0.0006667526625623913,
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],
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],
"original name":"epi_isl_442635_England_20200406_null_1",
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},
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"Nucleotide GTR":0.0006671950340770879,
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"Nucleotide GTR":0.0006668366371717707,
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],
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],
"original name":"epi_isl_442721_England_20200405_null_1",
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},
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"Nucleotide GTR":0.0006668500915332307,
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],
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],
"original name":"epi_isl_443008_England_20200407_null_2",
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},
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"Global MG94xREV":0.000670384924605571,
"Nucleotide GTR":0.0006673747025277539,
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"Nucleotide GTR":0.0006667526625623913,
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],
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],
"original name":"epi_isl_443302_Ile_de_France_20200323_null_1",
"synonymous substitution count": [
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},
"epi_isl_443317_Ile_de_France_20200323_null_1":{
"Global MG94xREV":0.0006699926804568149,
"Nucleotide GTR":0.0006669842196685992,
"amino-acid": [
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],
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],
"original name":"epi_isl_443365_England_20200415_null_2",
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},
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"Global MG94xREV":0.0006698579472767698,
"Nucleotide GTR":0.0006668500914794747,
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"Nucleotide GTR":0.0006669984555241027,
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],
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],
"original name":"epi_isl_443780_England_20200327_null_2",
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},
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"Nucleotide GTR":0.0006671932500137857,
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"Nucleotide GTR":0.0006670656692905362,
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"Nucleotide GTR":0.0006670390645076209,
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"Nucleotide GTR":0.0006668366371717707,
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],
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],
"original name":"epi_isl_444243_England_20200419_null_2",
"synonymous substitution count": [
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},
"epi_isl_444247_England_20200418_null_3":{
"Global MG94xREV":0.000670371994776086,
"Nucleotide GTR":0.0006673618307569397,
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"Nucleotide GTR":0.0006671922818391721,
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"Nucleotide GTR":0,
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],
"original name":"epi_isl_444630_New_York_20200330_null_3",
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},
"epi_isl_444637_New_York_20200330_null_1":{
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"Nucleotide GTR":0.0006668258965020904,
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"Nucleotide GTR":0.0006668366371181365,
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],
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],
"original name":"epi_isl_444851_Unknown_20200403_null_1",
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]
},
"epi_isl_444886_Unknown_20200327_null_1":{
"Global MG94xREV":0.0006698579472767698,
"Nucleotide GTR":0.0006668500914794747,
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"Nucleotide GTR":0.0002469094298339665,
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],
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],
"original name":"epi_isl_444976_Catalonia_20200406_null_1",
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},
"epi_isl_444998_Guam_20200326_null_1":{
"Global MG94xREV":0.0006698444322289597,
"Nucleotide GTR":0.0006668366371181365,
"amino-acid": [
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"Nucleotide GTR":0.0006670267565228714,
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],
"original name":"epi_isl_445040_Florida_20200428_null_1",
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},
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"Global MG94xREV":0.0006700828496380794,
"Nucleotide GTR":0.0006670739839641776,
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"Nucleotide GTR":0.000667048755537111,
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"Nucleotide GTR":0.0006667669964971533,
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],
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],
"original name":"epi_isl_445490_Wales_20200403_null_1",
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},
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"Global MG94xREV":0.000671142633976388,
"Nucleotide GTR":0.0006681290095644899,
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"Nucleotide GTR":0.0006667669964977223,
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"Nucleotide GTR":0.0006670656692905362,
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"Nucleotide GTR":0.0006669983231675987,
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],
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],
"original name":"epi_isl_446621_Wales_20200409_null_11",
"synonymous substitution count": [
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},
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"Global MG94xREV":0.0006699083817411005,
"Nucleotide GTR":0.0006669002994784836,
"amino-acid": [
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"Nucleotide GTR":0.0006670785736365369,
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],
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],
"original name":"epi_isl_446847_Wales_20200416_null_6",
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},
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"Global MG94xREV":0.0006701770484711187,
"Nucleotide GTR":0.0006671677598172291,
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"Nucleotide GTR":0.0006669208746968854,
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],
"original name":"epi_isl_446914_Wales_20200416_null_3",
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},
"epi_isl_446933_Wales_20200416_null_5":{
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"Nucleotide GTR":0.000667236023510242,
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"Nucleotide GTR":0,
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"original name":"epi_isl_447037_Gujarat_20200503_null_4",
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"Nucleotide GTR":0,
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"Nucleotide GTR":0.0006669204197440452,
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],
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],
"original name":"epi_isl_447300_South_Coast_District_20200324_null_1",
"synonymous substitution count": [
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},
"epi_isl_447329_South_District_20200317_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
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"Nucleotide GTR":0.0006668857645012172,
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],
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],
"original name":"epi_isl_447489_Comunitat_Valenciana_20200326_null_1",
"synonymous substitution count": [
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},
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"Global MG94xREV":0,
"Nucleotide GTR":0,
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"Nucleotide GTR":0.0006669983231675987,
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],
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],
"original name":"epi_isl_447563_Telangana_20200331_null_1",
"synonymous substitution count": [
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},
"epi_isl_447605_Kinshasa_20200423_null_2":{
"Global MG94xREV":0.0006699285927599788,
"Nucleotide GTR":0.0006669204197440452,
"amino-acid": [
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_447808_Tolima_20200404_null_1",
"synonymous substitution count": [
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},
"epi_isl_447845_Puerto_Rico_20200308_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_447895_California_20200408_null_9",
"synonymous substitution count": [
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},
"epi_isl_447918_Bangkok_20200201_null_1":{
"Global MG94xREV":0.0006701498835944799,
"Nucleotide GTR":0.0006671407169187386,
"amino-acid": [
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],
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],
"original name":"epi_isl_448032_England_20200501_null_3",
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},
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"Nucleotide GTR":0.0006668001647650683,
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"Nucleotide GTR":0.0006669653266384513,
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"Nucleotide GTR":0.000666820410652161,
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],
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],
"original name":"epi_isl_448701_England_20200101_null_1",
"synonymous substitution count": [
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},
"epi_isl_448822_England_20200324_null_14":{
"Global MG94xREV":0.00066972320763061,
"Nucleotide GTR":0.000666715956853271,
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"Nucleotide GTR":0.0006671784476235486,
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],
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],
"original name":"epi_isl_449047_England_20200504_null_1",
"synonymous substitution count": [
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},
"epi_isl_449112_England_20200408_null_4":{
"Global MG94xREV":0.0002488491964876085,
"Nucleotide GTR":0.000247731791668646,
"amino-acid": [
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"Nucleotide GTR":0.0006669653266384513,
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],
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],
"original name":"epi_isl_449186_Scotland_20200428_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_449237_Scotland_20200426_null_1":{
"Global MG94xREV":0.0006699083817420063,
"Nucleotide GTR":0.0006669002994793847,
"amino-acid": [
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"Nucleotide GTR":0,
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"Nucleotide GTR":0.0006673019193864223,
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"Nucleotide GTR":0.0006670422667759124,
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],
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],
"original name":"epi_isl_449717_England_20200415_null_1",
"synonymous substitution count": [
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},
"epi_isl_449724_England_20200417_null_2":{
"Global MG94xREV":0.0006698219114881108,
"Nucleotide GTR":0.000666814217501922,
"amino-acid": [
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"Nucleotide GTR":0.0006670517439311611,
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],
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],
"original name":"epi_isl_450049_New_Jersey_20200315_null_1",
"synonymous substitution count": [
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},
"epi_isl_450071_New_York_20200319_null_1":{
"Global MG94xREV":0.0006705291045469657,
"Nucleotide GTR":0.0006675182350595382,
"amino-acid": [
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_450211_Bavaria_20200201_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_450295_Wielkopolskie_20200411_null_3":{
"Global MG94xREV":0.0006700509893336073,
"Nucleotide GTR":0.0006670422667216809,
"amino-acid": [
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"Nucleotide GTR":0.0006670884784474628,
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"original name":"epi_isl_450591_Michigan_20200324_null_2",
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"Nucleotide GTR":0,
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"original name":"epi_isl_450701_Wisconsin_20200418_null_1",
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],
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],
"original name":"epi_isl_450807_Skane_20200320_null_1",
"synonymous substitution count": [
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},
"epi_isl_451165_Ghent_20200331_null_14":{
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"Nucleotide GTR":0.0002473026087050364,
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"Nucleotide GTR":0.0006673279470656768,
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],
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],
"original name":"epi_isl_451278_Louisiana_20200506_null_1",
"synonymous substitution count": [
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},
"epi_isl_451351_Sichuan_20200127_null_1":{
"Global MG94xREV":0.0006705300978241575,
"Nucleotide GTR":0.0006675192238766287,
"amino-acid": [
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"Nucleotide GTR":0.0006671929887593146,
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],
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],
"original name":"epi_isl_451519_New_South_Wales_20200312_null_1",
"synonymous substitution count": [
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},
"epi_isl_451539_New_South_Wales_20200405_null_1":{
"Global MG94xREV":0.0006701910456571109,
"Nucleotide GTR":0.0006671816941518107,
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"original name":"epi_isl_451679_Zurich_20200313_null_1",
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],
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],
"original name":"epi_isl_451707_Schwyz_20200316_null_1",
"synonymous substitution count": [
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},
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"Global MG94xREV":0,
"Nucleotide GTR":0,
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"original name":"epi_isl_451822_Basel_Land_20200331_null_3",
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"Nucleotide GTR":0,
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],
"original name":"epi_isl_451835_Zurich_20200331_null_1",
"synonymous substitution count": [
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},
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"Global MG94xREV":0,
"Nucleotide GTR":0,
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_451858_Basel_Land_20200407_null_1",
"synonymous substitution count": [
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},
"epi_isl_451860_Valais_20200407_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
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"original name":"epi_isl_451866_Zurich_20200407_null_1",
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"original name":"epi_isl_451910_Graubunden_20200407_null_1",
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"Nucleotide GTR":0.0006673731180150783,
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"Nucleotide GTR":0.0006666662811530965,
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],
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],
"original name":"epi_isl_452112_Texas_20200310_null_1",
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},
"epi_isl_452130_Colorado_20200307_null_7":{
"Global MG94xREV":0.0002505292520827563,
"Nucleotide GTR":0.0002494043033285727,
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"Nucleotide GTR":0.0006666519457820999,
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"Nucleotide GTR":0.0006675354691227188,
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],
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],
"original name":"epi_isl_452442_Andalusia_20200312_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_452457_Andalusia_20200313_null_2":{
"Global MG94xREV":0.0006703518476745949,
"Nucleotide GTR":0.0006673417741217589,
"amino-acid": [
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"Nucleotide GTR":0.000667789187620597,
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],
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],
"original name":"epi_isl_452571_Andalusia_20200326_null_4",
"synonymous substitution count": [
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]
},
"epi_isl_452598_Andalusia_20200326_null_2":{
"Global MG94xREV":0.0006700509893336073,
"Nucleotide GTR":0.0006670422667216809,
"amino-acid": [
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"Nucleotide GTR":0.000666970548540784,
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],
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],
"original name":"epi_isl_452631_Basque_Country_20200328_null_3",
"synonymous substitution count": [
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]
},
"epi_isl_452638_Basque_Country_20200327_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
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"codon": [
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"Nucleotide GTR":0.0006675590940935144,
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],
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],
"original name":"epi_isl_452685_Basque_Country_20200325_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_452691_Basque_Country_20200325_null_2":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
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"codon": [
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_452776_Basque_Country_20200304_null_1",
"synonymous substitution count": [
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},
"epi_isl_452789_Madhya_Pradesh_20200423_null_1":{
"Global MG94xREV":0.0006705292510965792,
"Nucleotide GTR":0.0006675183809511018,
"amino-acid": [
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"Nucleotide GTR":0.0006671026860755627,
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],
"original name":"epi_isl_452918_England_20200507_null_7",
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},
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"Nucleotide GTR":0.0006672756570756617,
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"Nucleotide GTR":0.0006669513714172736,
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],
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],
"original name":"epi_isl_453058_Scotland_20200415_null_2",
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},
"epi_isl_453069_Scotland_20200417_null_2":{
"Global MG94xREV":0.0006704890501259458,
"Nucleotide GTR":0.0006674783604944467,
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"original name":"epi_isl_453181_Scotland_20200515_null_19",
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],
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],
"original name":"epi_isl_453190_Scotland_20200331_null_3",
"synonymous substitution count": [
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},
"epi_isl_453261_England_20200403_null_1":{
"Global MG94xREV":0.0006699083817420063,
"Nucleotide GTR":0.0006669002994793847,
"amino-acid": [
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"original name":"epi_isl_453316_England_20200410_null_1",
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"original name":"epi_isl_453586_England_20200427_null_4",
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],
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],
"original name":"epi_isl_453597_England_20200422_null_1",
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},
"epi_isl_453705_England_20200420_null_6":{
"Global MG94xREV":0.0006695866372911909,
"Nucleotide GTR":0.0006665799997541491,
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"Nucleotide GTR":0.0006671265025362228,
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],
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],
"original name":"epi_isl_453855_Portugal_20200327_null_2",
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},
"epi_isl_453981_Portugal_20200404_null_2":{
"Global MG94xREV":0.0006699320362396503,
"Nucleotide GTR":0.0006669238477614971,
"amino-acid": [
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"Nucleotide GTR":0.0006670224185005598,
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],
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],
"original name":"epi_isl_454195_Portugal_20200418_null_2",
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},
"epi_isl_454203_Portugal_20200325_null_2":{
"Global MG94xREV":0.0006699320362941427,
"Nucleotide GTR":0.0006669238478157456,
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"Nucleotide GTR":0.000246909533168816,
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],
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],
"original name":"epi_isl_454343_Portugal_20200324_null_3",
"synonymous substitution count": [
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},
"epi_isl_454366_Pennsylvania_20200329_null_1":{
"Global MG94xREV":0.0006702140914876713,
"Nucleotide GTR":0.0006672046364999303,
"amino-acid": [
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"Nucleotide GTR":0.0006676581065381728,
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],
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],
"original name":"epi_isl_454431_Maryland_20200313_null_1",
"synonymous substitution count": [
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},
"epi_isl_454520_Nur_Sultan_20200426_null_1":{
"Global MG94xREV":0.0006704053154746452,
"Nucleotide GTR":0.0006673950018359317,
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"Nucleotide GTR":0.0006674868167534119,
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],
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],
"original name":"epi_isl_454568_Maharashtra_20200425_null_1",
"synonymous substitution count": [
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},
"epi_isl_454585_Nur_Sultan_20200504_null_6":{
"Global MG94xREV":0.0002485385437162691,
"Nucleotide GTR":0.0002474225338180401,
"amino-acid": [
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"Nucleotide GTR":0,
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"Nucleotide GTR":0.0006671426818554905,
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_454895_Stockholm_20200308_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_454926_Hubei_20200228_null_15":{
"Global MG94xREV":0.0006705315788413637,
"Nucleotide GTR":0.0006675206982436391,
"amino-acid": [
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"Nucleotide GTR":0.0006667294438797401,
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"Nucleotide GTR":0.0006671351326510403,
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],
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],
"original name":"epi_isl_455174_Netherlands_20200408_null_3",
"synonymous substitution count": [
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]
},
"epi_isl_455179_Netherlands_20200409_null_3":{
"Global MG94xREV":0.0006698219114331189,
"Nucleotide GTR":0.0006668142174471784,
"amino-acid": [
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"Nucleotide GTR":0.001335799298751852,
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],
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],
"original name":"epi_isl_455325_Canary_Islands_20200305_null_1",
"synonymous substitution count": [
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},
"epi_isl_455328_Galicia_20200309_null_1":{
"Global MG94xREV":0.002013206318035195,
"Nucleotide GTR":0.00200416643977523,
"amino-acid": [
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"Nucleotide GTR":0.0006677356247366129,
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],
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],
"original name":"epi_isl_455351_Basque_Country_20200229_null_1",
"synonymous substitution count": [
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},
"epi_isl_455354_Basque_Country_20200305_null_3":{
"Global MG94xREV":0.0006701997381896615,
"Nucleotide GTR":0.0006671903476523783,
"amino-acid": [
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"Nucleotide GTR":0.0002443508505830858,
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],
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],
"original name":"epi_isl_455392_Hubei_20200317_null_1",
"synonymous substitution count": [
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},
"epi_isl_455427_Osun_State_20200329_null_5":{
"Global MG94xREV":0.0006699926804044561,
"Nucleotide GTR":0.0006669842196164756,
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"Nucleotide GTR":0,
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"Nucleotide GTR":0.0006666519457824044,
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],
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],
"original name":"epi_isl_455573_Wisconsin_20200510_null_4",
"synonymous substitution count": [
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},
"epi_isl_455579_Minnesota_20200526_null_2":{
"Global MG94xREV":0.0006700974095538571,
"Nucleotide GTR":0.0006670884785017238,
"amino-acid": [
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"Nucleotide GTR":0.0006667294438797401,
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],
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],
"original name":"epi_isl_455609_Los_Angeles_20200406_null_1",
"synonymous substitution count": [
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},
"epi_isl_455617_Los_Angeles_20200403_null_2":{
"Global MG94xREV":0.0006700974094993504,
"Nucleotide GTR":0.0006670884784474628,
"amino-acid": [
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"Nucleotide GTR":0.0006668282695237261,
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],
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],
"original name":"epi_isl_455768_Odisha_20200507_null_4",
"synonymous substitution count": [
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},
"epi_isl_455772_Odisha_20200402_null_2":{
"Global MG94xREV":0.0006702456199440314,
"Nucleotide GTR":0.0006672360233844086,
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_456058_New_York_20200327_null_3",
"synonymous substitution count": [
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},
"epi_isl_456080_Rio_de_Janeiro_20200406_null_2":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
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"Nucleotide GTR":0,
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"Nucleotide GTR":0.0006667728553540638,
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"original name":"epi_isl_456469_Victoria_20200430_null_11",
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"Nucleotide GTR":0.000667057220248603,
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],
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],
"original name":"epi_isl_456583_Victoria_20200517_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_456602_Timor_Leste_20200412_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
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"original name":"epi_isl_456620_Victoria_20200519_null_3",
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"original name":"epi_isl_456671_England_20200504_null_12",
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"Nucleotide GTR":0.0002469095335761647,
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],
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],
"original name":"epi_isl_456696_England_20200515_null_6",
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},
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"Nucleotide GTR":0.0006669520546765279,
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_456729_England_20200520_null_14",
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},
"epi_isl_456731_England_20200521_null_1":{
"Global MG94xREV":0.0006699083817411005,
"Nucleotide GTR":0.0006669002994784836,
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_456792_Scotland_20200502_null_1",
"synonymous substitution count": [
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},
"epi_isl_456800_Scotland_20200506_null_1":{
"Global MG94xREV":0.0006699462036959701,
"Nucleotide GTR":0.0006669379516018438,
"amino-acid": [
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_456847_Scotland_20200507_null_2",
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},
"epi_isl_456859_Scotland_20200510_null_1":{
"Global MG94xREV":0.0006711190856169032,
"Nucleotide GTR":0.0006681055669439445,
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"Nucleotide GTR":0,
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"Nucleotide GTR":0.0006666662811530965,
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],
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],
"original name":"epi_isl_456999_Scotland_20200520_null_3",
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},
"epi_isl_457005_Scotland_20200523_null_1":{
"Global MG94xREV":0.0006701192897334454,
"Nucleotide GTR":0.0006671102604329824,
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"Nucleotide GTR":0.0006671026860755627,
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],
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],
"original name":"epi_isl_457106_England_20200415_null_2",
"synonymous substitution count": [
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]
},
"epi_isl_457165_England_20200406_null_1":{
"Global MG94xREV":0.001345216239622108,
"Nucleotide GTR":0.001339175829888354,
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"Nucleotide GTR":0.0006669002994246831,
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],
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],
"original name":"epi_isl_457352_England_20200510_null_1",
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},
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"Global MG94xREV":0.0006700974095512985,
"Nucleotide GTR":0.0006670884784991782,
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"nonsynonymous substitution count": [
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"original name":"epi_isl_457402_England_20200429_null_12",
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"Nucleotide GTR":0,
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],
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],
"original name":"epi_isl_457483_England_20200507_null_2",
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},
"epi_isl_457511_England_20200508_null_1":{
"Global MG94xREV":0.0006706632658319101,
"Nucleotide GTR":0.0006676517939215355,
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"Nucleotide GTR":0.0006674357360994759,
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"Nucleotide GTR":0.0006666519457824044,
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"original name":"epi_isl_457668_England_20200401_null_44",
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"epi_isl_457777_Maryland_20200330_null_16":{
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"Nucleotide GTR":0,
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