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]
}
}
},
"headers": [
["ES", "Expected synonymous sites"],
["EN", "Expected non-synonymous sites"],
["S", "Inferred synonymous substitutions"],
["N", "Inferred non-synonymous substitutions"],
["P[S]", "Expected proportion of synonymous sites"],
["dS", "Inferred synonymous susbsitution rate"],
["dN", "Inferred non-synonymous susbsitution rate"],
["dN-dS", "Scaled by the length of the tested branches"],
["P [dN/dS > 1]", "Binomial probability that S is no greater than the observed value, with Ps probability of success"],
["P [dN/dS < 1]", "Binomial probability that S is no less than the observed value, with Ps probability of success"],
["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"]
]
},
"analysis":{
"authors":"Sergei L Kosakovsky Pond and Simon DW Frost",
"citation":"Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection (2005). _Mol Biol Evol_ 22 (5): 1208-1222",
"contact":"spond@temple.edu",
"info":"SLAC (Single Likelihood Ancestor Counting)\n uses a maximum likelihood ancestral state reconstruction\n and minimum path substitution counting to estimate site - level\n dS and dN,\n and applies a simple binomial - based test to test\n if dS differs drom dN.\n The estimates aggregate information over all branches,\n so the signal is derived from\n pervasive diversification or conservation. A subset of branches can be selected\n for testing as well.\n Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
"requirements":"in-frame codon alignment and a phylogenetic tree",
"version":"2.00"
},
"branch attributes":{
"0":{
"Node103":{
"Global MG94xREV":0.006555762795921156,
"Nucleotide GTR":0.006320202442242836,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "F", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "ACG", "---", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TTT", "CGT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
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"Global MG94xREV":0.009213593695199489,
"Nucleotide GTR":0.008882532694816763,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "I", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
],
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["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "ACG", "---", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "ATA", "ATG", "AAT", "TCT", "CGT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
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"Global MG94xREV":0.006338717885133678,
"Nucleotide GTR":0.006110956345649955,
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["-", "-", "-", "-", "-", "-", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "I", "M", "N", "S", "R", "N", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
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["---", "---", "---", "---", "---", "---", "TTC", "GCT", "TTT", "CCG", "TTT", "ACG", "---", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "ATA", "ATG", "AAT", "TCT", "CGT", "AAC", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
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],
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]
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"Global MG94xREV":1563.39113164441,
"Nucleotide GTR":1507.215675122884,
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["-", "-", "-", "-", "-", "-", "I", "I", "I", "I", "I", "I", "-", "I", "-", "-", "-", "-", "-", "-", "-", "-", "-", "I", "I", "I", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
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],
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],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 1, 0, 0, 0.6666666666666666, 0, 0.5, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node125":{
"Global MG94xREV":1563.39113164441,
"Nucleotide GTR":1507.215675122884,
"amino-acid": [
["-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "K", "K", "K", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "AAA", "AAA", "AAA", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
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"Nucleotide GTR":0.005488312201737755,
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"Nucleotide GTR":0.001280583433242423,
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"Nucleotide GTR":0.09519454383391357,
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"Nucleotide GTR":0.05466245915983487,
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"Nucleotide GTR":0.002110295399427351,
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"Nucleotide GTR":1.0411313797627,
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"Nucleotide GTR":0.4456737255587346,
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"Nucleotide GTR":0,
"amino-acid": [
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"Nucleotide GTR":0.008840218310989785,
"amino-acid": [
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"Nucleotide GTR":2.967798936211058,
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"Nucleotide GTR":5.158954182221427,
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"Nucleotide GTR":0.02188573897368328,
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"Nucleotide GTR":0.03227171295325312,
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"Nucleotide GTR":0.0003441657650336103,
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"Nucleotide GTR":0,
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"Nucleotide GTR":0.008849477893584175,
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"Nucleotide GTR":0,
"amino-acid": [
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"Nucleotide GTR":0.008788089672212543,
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"Nucleotide GTR":0.008795393826546748,
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"Nucleotide GTR":0,
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"Global MG94xREV":0.3522814211581104,
"Nucleotide GTR":0.3396233158017153,
"amino-acid": [
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"Nucleotide GTR":0.008853500391901178,
"amino-acid": [
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"Nucleotide GTR":0.00878603319483145,
"amino-acid": [
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"epi_isl_425251_England_20200331_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"Nucleotide GTR":0.2786879102993161,
"amino-acid": [
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"original name":"epi_isl_426103_Washington_20200323_null_2",
"synonymous substitution count": [
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"Global MG94xREV":0.009191559759825428,
"Nucleotide GTR":0.008861290478388488,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_426949_Victoria_20200328_null_1",
"synonymous substitution count": [
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"epi_isl_427272_Arizona_20200323_null_3":{
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"Nucleotide GTR":0,
"amino-acid": [
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"original name":"epi_isl_427272_Arizona_20200323_null_3",
"synonymous substitution count": [
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"epi_isl_428685_Madrid_20200327_null_1":{
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"Nucleotide GTR":1507.215675122884,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_428685_Madrid_20200327_null_1",
"synonymous substitution count": [
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"epi_isl_429689_Minas_gerais_20200317_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"epi_isl_430520_Victoria_20200402_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_430520_Victoria_20200402_null_1",
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"epi_isl_430566_Victoria_20200406_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"epi_isl_430608_Victoria_20200408_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"epi_isl_430709_Victoria_20200407_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"epi_isl_430737_Beijing_20200225_null_5":{
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"Nucleotide GTR":0.008860949960104504,
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"Nucleotide GTR":0.4555620372355239,
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"Nucleotide GTR":0.008882344070217525,
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"Nucleotide GTR":0.008881380955047497,
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"Nucleotide GTR":0.008904383048825818,
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"Nucleotide GTR":0.008862459384643234,
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"epi_isl_434332_Washington_20200326_null_1":{
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"Nucleotide GTR":0.008798888527865227,
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"epi_isl_435058_KZN_20200311_null_1":{
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"Nucleotide GTR":0.008939413969623744,
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"Nucleotide GTR":0.8955551123130505,
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"epi_isl_437867_Connecticut_20200402_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"epi_isl_437869_Connecticut_20200403_null_11":{
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"Nucleotide GTR":0,
"amino-acid": [
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]
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"Global MG94xREV":0.009126585764556473,
"Nucleotide GTR":0.008798651115683573,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "H", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
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"original name":"epi_isl_438253_England_20200404_null_2",
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]
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"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
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"original name":"epi_isl_438977_Scotland_20200420_null_1",
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]
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"epi_isl_439881_England_20200323_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "AV", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
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],
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"original name":"epi_isl_439881_England_20200323_null_1",
"synonymous substitution count": [
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]
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"epi_isl_440074_England_20200323_null_3":{
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"Nucleotide GTR":0,
"amino-acid": [
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],
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],
"original name":"epi_isl_440074_England_20200323_null_3",
"synonymous substitution count": [
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]
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"epi_isl_440493_England_20200310_null_4":{
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"Nucleotide GTR":0,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "I", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
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],
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"original name":"epi_isl_440493_England_20200310_null_4",
"synonymous substitution count": [
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]
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"epi_isl_440730_England_20200402_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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],
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"original name":"epi_isl_440730_England_20200402_null_1",
"synonymous substitution count": [
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]
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"epi_isl_441602_England_20200406_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"original name":"epi_isl_441602_England_20200406_null_1",
"synonymous substitution count": [
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]
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"epi_isl_442129_England_20200407_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"synonymous substitution count": [
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]
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"epi_isl_442145_England_20200405_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"synonymous substitution count": [
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]
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"epi_isl_442883_England_20200410_null_1":{
"Global MG94xREV":0.009126692648827711,
"Nucleotide GTR":0.008798754159410622,
"amino-acid": [
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"original name":"epi_isl_442883_England_20200410_null_1",
"synonymous substitution count": [
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]
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"epi_isl_443363_England_20200414_null_2":{
"Global MG94xREV":0.009271344274000993,
"Nucleotide GTR":0.008938208191405705,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_443363_England_20200414_null_2",
"synonymous substitution count": [
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]
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"epi_isl_443597_England_20200414_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_443597_England_20200414_null_1",
"synonymous substitution count": [
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"epi_isl_443691_England_20200330_null_2":{
"Global MG94xREV":0.008464309491041905,
"Nucleotide GTR":0.008160171620374426,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_443691_England_20200330_null_2",
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]
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"epi_isl_444065_California_20200430_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["IM", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
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"codon": [
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"original name":"epi_isl_444065_California_20200430_null_1",
"synonymous substitution count": [
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]
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"epi_isl_444149_England_20200409_null_4":{
"Global MG94xREV":0.009125246950574963,
"Nucleotide GTR":0.008797360407697491,
"amino-acid": [
["M", "G", "Y", "T", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
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"codon": [
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"original name":"epi_isl_444149_England_20200409_null_4",
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]
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"epi_isl_444822_Unknown_20200311_null_6":{
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"Nucleotide GTR":0,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "L", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
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"codon": [
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],
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],
"original name":"epi_isl_444822_Unknown_20200311_null_6",
"synonymous substitution count": [
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]
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"epi_isl_446256_Wales_20200417_null_2":{
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"Nucleotide GTR":0,
"amino-acid": [
["ML", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
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"codon": [
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],
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],
"original name":"epi_isl_446256_Wales_20200417_null_2",
"synonymous substitution count": [
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]
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"epi_isl_446888_Wales_20200417_null_1":{
"Global MG94xREV":0.0003648684181808716,
"Nucleotide GTR":0.0003517580393724422,
"amino-acid": [
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"codon": [
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],
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],
"original name":"epi_isl_446888_Wales_20200417_null_1",
"synonymous substitution count": [
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]
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"epi_isl_446927_Wales_20200417_null_17":{
"Global MG94xREV":0.009124751362339707,
"Nucleotide GTR":0.008796882626839279,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "P", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
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"codon": [
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],
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],
"original name":"epi_isl_446927_Wales_20200417_null_17",
"synonymous substitution count": [
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]
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"epi_isl_447517_Comunitat_Valenciana_20200401_null_3":{
"Global MG94xREV":0.009212160832479608,
"Nucleotide GTR":0.008881151317432712,
"amino-acid": [
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"codon": [
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],
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],
"original name":"epi_isl_447517_Comunitat_Valenciana_20200401_null_3",
"synonymous substitution count": [
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]
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"epi_isl_447596_Kinshasa_20200405_null_10":{
"Global MG94xREV":0.009113712143356458,
"Nucleotide GTR":0.008786240066858042,
"amino-acid": [
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"codon": [
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],
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],
"original name":"epi_isl_447596_Kinshasa_20200405_null_10",
"synonymous substitution count": [
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]
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"epi_isl_448167_Scotland_20200411_null_4":{
"Global MG94xREV":0.009212505514496977,
"Nucleotide GTR":0.008881483614404963,
"amino-acid": [
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"codon": [
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],
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],
"original name":"epi_isl_448167_Scotland_20200411_null_4",
"synonymous substitution count": [
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]
},
"epi_isl_448447_England_20200427_null_1":{
"Global MG94xREV":0.008758642997713202,
"Nucleotide GTR":0.008443929194528162,
"amino-acid": [
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"codon": [
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],
"nonsynonymous substitution count": [
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],
"original name":"epi_isl_448447_England_20200427_null_1",
"synonymous substitution count": [
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]
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"epi_isl_448730_England_20200101_null_24":{
"Global MG94xREV":0.002615597847979056,
"Nucleotide GTR":0.002521614710801866,
"amino-acid": [
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"codon": [
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],
"nonsynonymous substitution count": [
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],
"original name":"epi_isl_448730_England_20200101_null_24",
"synonymous substitution count": [
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]
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"epi_isl_448967_Northern_Ireland_20200328_null_30":{
"Global MG94xREV":0.003472177798695471,
"Nucleotide GTR":0.003347416202561521,
"amino-acid": [
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"codon": [
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],
"nonsynonymous substitution count": [
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],
"original name":"epi_isl_448967_Northern_Ireland_20200328_null_30",
"synonymous substitution count": [
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]
},
"epi_isl_449194_Scotland_20200422_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"nonsynonymous substitution count": [
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]
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"epi_isl_449262_Scotland_20200503_null_1":{
"Global MG94xREV":0.009213296394983781,
"Nucleotide GTR":0.008882246077132776,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "F", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
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"codon": [
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"original name":"epi_isl_449262_Scotland_20200503_null_1",
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]
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"epi_isl_449707_England_20200416_null_3":{
"Global MG94xREV":0.008276049429237844,
"Nucleotide GTR":0.007978676081345604,
"amino-acid": [
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"original name":"epi_isl_449707_England_20200416_null_3",
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]
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"epi_isl_449727_England_20200417_null_3":{
"Global MG94xREV":0.009126531592897925,
"Nucleotide GTR":0.008798598890510196,
"amino-acid": [
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"original name":"epi_isl_449727_England_20200417_null_3",
"synonymous substitution count": [
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]
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"epi_isl_450252_Saint_Petersburg_20200420_null_1":{
"Global MG94xREV":0.001063301830308784,
"Nucleotide GTR":0.00102509548224351,
"amino-acid": [
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],
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],
"original name":"epi_isl_450252_Saint_Petersburg_20200420_null_1",
"synonymous substitution count": [
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]
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"epi_isl_450500_Hubei_20200110_null_1":{
"Global MG94xREV":0.009193494117819461,
"Nucleotide GTR":0.008863155331419131,
"amino-acid": [
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],
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"original name":"epi_isl_450500_Hubei_20200110_null_1",
"synonymous substitution count": [
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]
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"epi_isl_450547_Utah_20200403_null_24":{
"Global MG94xREV":0.009182769186871187,
"Nucleotide GTR":0.008852815766538227,
"amino-acid": [
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"codon": [
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],
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"original name":"epi_isl_450547_Utah_20200403_null_24",
"synonymous substitution count": [
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]
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"epi_isl_450635_Michigan_20200330_null_17":{
"Global MG94xREV":0.009182789658687737,
"Nucleotide GTR":0.00885283550276557,
"amino-acid": [
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],
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],
"original name":"epi_isl_450635_Michigan_20200330_null_17",
"synonymous substitution count": [
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]
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"epi_isl_450703_Illinois_20200415_null_19":{
"Global MG94xREV":0.009103128532252629,
"Nucleotide GTR":0.008776036743945295,
"amino-acid": [
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"codon": [
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],
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],
"original name":"epi_isl_450703_Illinois_20200415_null_19",
"synonymous substitution count": [
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]
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"epi_isl_450842_Dhaka_20200506_null_3":{
"Global MG94xREV":0.2741381760973441,
"Nucleotide GTR":0.2642878981467146,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_450842_Dhaka_20200506_null_3",
"synonymous substitution count": [
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]
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"epi_isl_450843_Dhaka_20200506_null_2":{
"Global MG94xREV":0.009193502881804805,
"Nucleotide GTR":0.008863163780498704,
"amino-acid": [
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"codon": [
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],
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],
"original name":"epi_isl_450843_Dhaka_20200506_null_2",
"synonymous substitution count": [
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]
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"epi_isl_451370_Sichuan_20200204_null_5":{
"Global MG94xREV":0.009182379842473779,
"Nucleotide GTR":0.008852440411985614,
"amino-acid": [
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"codon": [
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],
"nonsynonymous substitution count": [
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],
"original name":"epi_isl_451370_Sichuan_20200204_null_5",
"synonymous substitution count": [
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]
},
"epi_isl_451762_Vaud_20200326_null_2":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"nonsynonymous substitution count": [
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"original name":"epi_isl_451762_Vaud_20200326_null_2",
"synonymous substitution count": [
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]
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"epi_isl_451777_Schwyz_20200326_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"Nucleotide GTR":0.008852423808471434,
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"Nucleotide GTR":0,
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"Nucleotide GTR":0.008787477955958941,
"amino-acid": [
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"epi_isl_452466_Andalusia_20200311_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"epi_isl_452536_Navarra_20200311_null_3":{
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"Nucleotide GTR":0,
"amino-acid": [
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"epi_isl_452945_England_20200515_null_2":{
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"Nucleotide GTR":0.008793744473462779,
"amino-acid": [
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"original name":"epi_isl_452945_England_20200515_null_2",
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]
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"epi_isl_453009_Scotland_20200403_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"original name":"epi_isl_453009_Scotland_20200403_null_1",
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"epi_isl_453192_Scotland_20200424_null_7":{
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"Nucleotide GTR":0.008853563574210993,
"amino-acid": [
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"original name":"epi_isl_453192_Scotland_20200424_null_7",
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"epi_isl_453574_England_20200424_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"synonymous substitution count": [
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"epi_isl_453741_England_20200422_null_1":{
"Global MG94xREV":0.001630192799788168,
"Nucleotide GTR":0.001571617039127509,
"amino-acid": [
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"codon": [
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"synonymous substitution count": [
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"epi_isl_453857_Portugal_20200327_null_1":{
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"Nucleotide GTR":0.1989171754595778,
"amino-acid": [
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"codon": [
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"amino-acid": [
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"Nucleotide GTR":0.001702800529068151,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "V", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "ACG", "---", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CGT", "AAC", "TAC", "ATA", "GTA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_455107_Vastra_Gotaland_20200512_null_23",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_455193_Netherlands_20200101_null_48":{
"Global MG94xREV":0.001127031874353728,
"Nucleotide GTR":0.001086535591130261,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "ACG", "---", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGT", "AGA", "ATG", "AAT", "TCT", "CGT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_455193_Netherlands_20200101_null_48",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_455238_Netherlands_20200407_null_6":{
"Global MG94xREV":0.009213123355861275,
"Nucleotide GTR":0.00888207925561731,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "L", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "ACG", "---", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CTT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_455238_Netherlands_20200407_null_6",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_455438_Quintana_Roo_20200314_null_32513":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "ACG", "---", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CGT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_455438_Quintana_Roo_20200314_null_32513",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_455472_Buzau_20200513_null_1":{
"Global MG94xREV":0.009125669576937348,
"Nucleotide GTR":0.008797767848334186,
"amino-acid": [
["T", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "-", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["ACG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "ACG", "---", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CGT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_455472_Buzau_20200513_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
}
},
"attributes":{
"Global MG94xREV":{
"attribute type":"branch length",
"display order":1
},
"Nucleotide GTR":{
"attribute type":"branch length",
"display order":0
},
"amino-acid":{
"attribute type":"node label",
"display order":1
},
"codon":{
"attribute type":"node label",
"display order":0
},
"nonsynonymous substitution count":{
"attribute type":"branch label",
"display order":1
},
"original name":{
"attribute type":"node label",
"display order":-1
},
"synonymous substitution count":{
"attribute type":"branch label",
"display order":0
}
}
},
"data partitions":{
"0":{
"coverage": [
[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46]
],
"name":"slac.filter.default"
}
},
"fits":{
"Global MG94xREV":{
"AIC-c":inf,
"Equilibrium frequencies": [
[0.03070196329886989],
[0.02317290758366482],
[0.01454912119716198],
[0.03655610006414198],
[0.01627513581262074],
[0.01228397723058109],
[0.007712501025848285],
[0.01937841849174396],
[0.01503637266893246],
[0.01134899650744945],
[0.007125472928112218],
[0.01790345257521227],
[0.04525756360083564],
[0.03415903173926992],
[0.02144676454424207],
[0.05388710837630099],
[0.01335247135160439],
[0.01007803903718593],
[0.006327501667728076],
[0.01589847118509213],
[0.00707815596566387],
[0.005342376722244735],
[0.003354213800413517],
[0.008427792556182759],
[0.006539410308700297],
[0.004935747895339154],
[0.003098911695420896],
[0.007786320870695884],
[0.0196827908215829],
[0.014855971530457],
[0.00932732888688385],
[0.02343583254957004],
[0.01757723801675961],
[0.0132667643490227],
[0.008329544391925318],
[0.02092880072641989],
[0.009317708224348414],
[0.007032722613616282],
[0.004415498283161194],
[0.01109437435326154],
[0.008608501636774917],
[0.006497435063709925],
[0.004079417736911166],
[0.01024993887761756],
[0.02591049177300677],
[0.01955645068878362],
[0.01227852699235752],
[0.03085100847606147],
[0.01993572881870583],
[0.03144933344756183],
[0.01400155301515691],
[0.01056794612414762],
[0.006635090068442135],
[0.01667131733866365],
[0.00976357912446177],
[0.00613006785993531],
[0.01540239929621923],
[0.0389352312256924],
[0.02938712766211929],
[0.01845072226905357],
[0.04635925705634947]
],
"Log Likelihood":-inf,
"Rate Distributions":{
"non-synonymous/synonymous rate ratio for *test*": [
[0.9165418920175951, 1]
]
},
"display order":1,
"estimated parameters":157
},
"Nucleotide GTR":{
"AIC-c":2305.758725624514,
"Equilibrium frequencies": [
[0.2990686364470545],
[0.1837722517893192],
[0.1592723435492751],
[0.3578867682143513]
],
"Log Likelihood":-914.4085573801275,
"Rate Distributions":{
"Substitution rate from nucleotide A to nucleotide C":0.121621587112763,
"Substitution rate from nucleotide A to nucleotide G":1,
"Substitution rate from nucleotide A to nucleotide T":0.1091590166989641,
"Substitution rate from nucleotide C to nucleotide G":0.8042531453418743,
"Substitution rate from nucleotide C to nucleotide T":1.578713555424976,
"Substitution rate from nucleotide G to nucleotide T":0.5746244597827356
},
"display order":0,
"estimated parameters":235
}
},
"input":{
"file name":"/data/shares/veg/SARS-CoV-2/SARS-CoV-2/data/fasta/2020-05-31/sequences.ORF10.compressed.fas",
"number of sequences":115,
"number of sites":47,
"partition count":1,
"trees":{
"0":"((epi_isl_450252_Saint_Petersburg_20200420_null_1,epi_isl_451901_Valais_20200407_null_3)Node194,epi_isl_455438_Quintana_Roo_20200314_null_32513,epi_isl_451893_Bern_20200407_null_2,epi_isl_443363_England_20200414_null_2,epi_isl_427272_Arizona_20200323_null_3,epi_isl_451370_Sichuan_20200204_null_5,epi_isl_449194_Scotland_20200422_null_1,epi_isl_451913_Vaud_20200407_null_2,(epi_isl_414937_Shandong_20200126_null_1,epi_isl_446888_Wales_20200417_null_1)Node183,epi_isl_449727_England_20200417_null_3,(epi_isl_439881_England_20200323_null_1,epi_isl_455107_Vastra_Gotaland_20200512_null_23)Node225,epi_isl_430520_Victoria_20200402_null_1,epi_isl_423770_England_20200322_null_1,(epi_isl_450703_Illinois_20200415_null_19,epi_isl_440730_England_20200402_null_1,epi_isl_451826_Bern_20200331_null_1)Node202,epi_isl_442145_England_20200405_null_1,epi_isl_444149_England_20200409_null_4,epi_isl_446927_Wales_20200417_null_17,((epi_isl_453950_Portugal_20200331_null_14,epi_isl_454016_Portugal_20200313_null_2)Node212,epi_isl_425251_England_20200331_null_1)Node211,epi_isl_454259_Portugal_20200407_null_1,epi_isl_426949_Victoria_20200328_null_1,epi_isl_449262_Scotland_20200503_null_1,epi_isl_424600_Reykjavik_20200327_null_1,epi_isl_454308_Portugal_20200327_null_1,epi_isl_423536_England_20200331_null_1,epi_isl_454097_Portugal_20200320_null_4,(epi_isl_423904_England_20200318_null_1,epi_isl_444822_Unknown_20200311_null_6)Node21,(epi_isl_448967_Northern_Ireland_20200328_null_30,epi_isl_451762_Vaud_20200326_null_2)Node31,epi_isl_442129_England_20200407_null_1,epi_isl_447596_Kinshasa_20200405_null_10,(epi_isl_448447_England_20200427_null_1,epi_isl_449707_England_20200416_null_3,epi_isl_453882_Portugal_20200328_null_1)Node37,epi_isl_435058_KZN_20200311_null_1,epi_isl_438253_England_20200404_null_2,(epi_isl_430709_Victoria_20200407_null_1,epi_isl_443691_England_20200330_null_2)Node48,epi_isl_455238_Netherlands_20200407_null_6,epi_isl_433714_England_20200405_null_1,epi_isl_447517_Comunitat_Valenciana_20200401_null_3,epi_isl_432653_England_20200318_null_1,epi_isl_430566_Victoria_20200406_null_1,epi_isl_414480_USA_20200221_null_1,epi_isl_452292_Michigan_20200316_null_2,epi_isl_442883_England_20200410_null_1,epi_isl_452945_England_20200515_null_2,epi_isl_454611_California_20200416_null_1,epi_isl_434332_Washington_20200326_null_1,epi_isl_446256_Wales_20200417_null_2,((epi_isl_426103_Washington_20200323_null_2,epi_isl_430896_Washington_20200329_null_1)Node65,epi_isl_453908_Portugal_20200329_null_2)Node64,epi_isl_444065_California_20200430_null_1,epi_isl_433319_Scotland_20200325_null_1,(epi_isl_452466_Andalusia_20200311_null_1,epi_isl_453990_Portugal_20200405_null_6)Node171,epi_isl_434251_Washington_20200402_null_1,epi_isl_440074_England_20200323_null_3,epi_isl_441602_England_20200406_null_1,epi_isl_432289_Wales_20200401_null_1,(epi_isl_453009_Scotland_20200403_null_1,epi_isl_453741_England_20200422_null_1)Node148,epi_isl_422206_Wales_20200330_null_1,epi_isl_433486_England_20200417_null_1,epi_isl_454396_Pennsylvania_20200101_null_2,epi_isl_430608_Victoria_20200408_null_1,epi_isl_450635_Michigan_20200330_null_17,epi_isl_430737_Beijing_20200225_null_5,epi_isl_450843_Dhaka_20200506_null_2,(epi_isl_440493_England_20200310_null_4,((((epi_isl_422425_Zhejiang_20200124_null_1,epi_isl_424315_Idaho_20200320_null_1)Node126,epi_isl_418999_Singapore_20200301_null_4)Node125,epi_isl_428685_Madrid_20200327_null_1)Node124,(epi_isl_424288_Washington_20200322_null_1,epi_isl_430903_USA_20200405_null_3,epi_isl_437867_Connecticut_20200402_null_1)Node131)Node123,(epi_isl_429689_Minas_gerais_20200317_null_1,epi_isl_453928_Portugal_20200330_null_1)Node136)Node121,epi_isl_415435_Wales_20200306_null_1,(epi_isl_452536_Navarra_20200311_null_3,epi_isl_455193_Netherlands_20200101_null_48)Node152,epi_isl_448167_Scotland_20200411_null_4,epi_isl_450500_Hubei_20200110_null_1,epi_isl_414934_Shandong_20200121_null_1,epi_isl_455472_Buzau_20200513_null_1,epi_isl_418182_Madrid_20200312_null_3,epi_isl_443597_England_20200414_null_1,epi_isl_454176_Portugal_20200404_null_1,epi_isl_451777_Schwyz_20200326_null_1,epi_isl_417222_England_20200304_null_1,(epi_isl_421889_England_20200327_null_1,epi_isl_448730_England_20200101_null_24)Node103,epi_isl_450547_Utah_20200403_null_24,epi_isl_422051_Wales_20200330_null_1,epi_isl_453574_England_20200424_null_1,epi_isl_454499_Nur_Sultan_20200416_null_21,((((epi_isl_437869_Connecticut_20200403_null_11,epi_isl_453857_Portugal_20200327_null_1)Node92,epi_isl_450842_Dhaka_20200506_null_3)Node91,epi_isl_416567_unknown_20200215_null_1)Node90,epi_isl_416604_unknown_20200216_null_1)Node89,epi_isl_424158_England_20200321_null_1,epi_isl_453192_Scotland_20200424_null_7,epi_isl_424366_Kayseri_20200317_null_3,epi_isl_437478_Makkah_20200409_null_1,epi_isl_438977_Scotland_20200420_null_1)"
}
},
"tested":{
"0":{
"Node103":"test",
"Node121":"test",
"Node123":"test",
"Node124":"test",
"Node125":"test",
"Node126":"test",
"Node131":"test",
"Node136":"test",
"Node148":"test",
"Node152":"test",
"Node171":"test",
"Node183":"test",
"Node194":"test",
"Node202":"test",
"Node21":"test",
"Node211":"test",
"Node212":"test",
"Node225":"test",
"Node31":"test",
"Node37":"test",
"Node48":"test",
"Node64":"test",
"Node65":"test",
"Node89":"test",
"Node90":"test",
"Node91":"test",
"Node92":"test",
"epi_isl_414480_USA_20200221_null_1":"test",
"epi_isl_414934_Shandong_20200121_null_1":"test",
"epi_isl_414937_Shandong_20200126_null_1":"test",
"epi_isl_415435_Wales_20200306_null_1":"test",
"epi_isl_416567_unknown_20200215_null_1":"test",
"epi_isl_416604_unknown_20200216_null_1":"test",
"epi_isl_417222_England_20200304_null_1":"test",
"epi_isl_418182_Madrid_20200312_null_3":"test",
"epi_isl_418999_Singapore_20200301_null_4":"test",
"epi_isl_421889_England_20200327_null_1":"test",
"epi_isl_422051_Wales_20200330_null_1":"test",
"epi_isl_422206_Wales_20200330_null_1":"test",
"epi_isl_422425_Zhejiang_20200124_null_1":"test",
"epi_isl_423536_England_20200331_null_1":"test",
"epi_isl_423770_England_20200322_null_1":"test",
"epi_isl_423904_England_20200318_null_1":"test",
"epi_isl_424158_England_20200321_null_1":"test",
"epi_isl_424288_Washington_20200322_null_1":"test",
"epi_isl_424315_Idaho_20200320_null_1":"test",
"epi_isl_424366_Kayseri_20200317_null_3":"test",
"epi_isl_424600_Reykjavik_20200327_null_1":"test",
"epi_isl_425251_England_20200331_null_1":"test",
"epi_isl_426103_Washington_20200323_null_2":"test",
"epi_isl_426949_Victoria_20200328_null_1":"test",
"epi_isl_427272_Arizona_20200323_null_3":"test",
"epi_isl_428685_Madrid_20200327_null_1":"test",
"epi_isl_429689_Minas_gerais_20200317_null_1":"test",
"epi_isl_430520_Victoria_20200402_null_1":"test",
"epi_isl_430566_Victoria_20200406_null_1":"test",
"epi_isl_430608_Victoria_20200408_null_1":"test",
"epi_isl_430709_Victoria_20200407_null_1":"test",
"epi_isl_430737_Beijing_20200225_null_5":"test",
"epi_isl_430896_Washington_20200329_null_1":"test",
"epi_isl_430903_USA_20200405_null_3":"test",
"epi_isl_432289_Wales_20200401_null_1":"test",
"epi_isl_432653_England_20200318_null_1":"test",
"epi_isl_433319_Scotland_20200325_null_1":"test",
"epi_isl_433486_England_20200417_null_1":"test",
"epi_isl_433714_England_20200405_null_1":"test",
"epi_isl_434251_Washington_20200402_null_1":"test",
"epi_isl_434332_Washington_20200326_null_1":"test",
"epi_isl_435058_KZN_20200311_null_1":"test",
"epi_isl_437478_Makkah_20200409_null_1":"test",
"epi_isl_437867_Connecticut_20200402_null_1":"test",
"epi_isl_437869_Connecticut_20200403_null_11":"test",
"epi_isl_438253_England_20200404_null_2":"test",
"epi_isl_438977_Scotland_20200420_null_1":"test",
"epi_isl_439881_England_20200323_null_1":"test",
"epi_isl_440074_England_20200323_null_3":"test",
"epi_isl_440493_England_20200310_null_4":"test",
"epi_isl_440730_England_20200402_null_1":"test",
"epi_isl_441602_England_20200406_null_1":"test",
"epi_isl_442129_England_20200407_null_1":"test",
"epi_isl_442145_England_20200405_null_1":"test",
"epi_isl_442883_England_20200410_null_1":"test",
"epi_isl_443363_England_20200414_null_2":"test",
"epi_isl_443597_England_20200414_null_1":"test",
"epi_isl_443691_England_20200330_null_2":"test",
"epi_isl_444065_California_20200430_null_1":"test",
"epi_isl_444149_England_20200409_null_4":"test",
"epi_isl_444822_Unknown_20200311_null_6":"test",
"epi_isl_446256_Wales_20200417_null_2":"test",
"epi_isl_446888_Wales_20200417_null_1":"test",
"epi_isl_446927_Wales_20200417_null_17":"test",
"epi_isl_447517_Comunitat_Valenciana_20200401_null_3":"test",
"epi_isl_447596_Kinshasa_20200405_null_10":"test",
"epi_isl_448167_Scotland_20200411_null_4":"test",
"epi_isl_448447_England_20200427_null_1":"test",
"epi_isl_448730_England_20200101_null_24":"test",
"epi_isl_448967_Northern_Ireland_20200328_null_30":"test",
"epi_isl_449194_Scotland_20200422_null_1":"test",
"epi_isl_449262_Scotland_20200503_null_1":"test",
"epi_isl_449707_England_20200416_null_3":"test",
"epi_isl_449727_England_20200417_null_3":"test",
"epi_isl_450252_Saint_Petersburg_20200420_null_1":"test",
"epi_isl_450500_Hubei_20200110_null_1":"test",
"epi_isl_450547_Utah_20200403_null_24":"test",
"epi_isl_450635_Michigan_20200330_null_17":"test",
"epi_isl_450703_Illinois_20200415_null_19":"test",
"epi_isl_450842_Dhaka_20200506_null_3":"test",
"epi_isl_450843_Dhaka_20200506_null_2":"test",
"epi_isl_451370_Sichuan_20200204_null_5":"test",
"epi_isl_451762_Vaud_20200326_null_2":"test",
"epi_isl_451777_Schwyz_20200326_null_1":"test",
"epi_isl_451826_Bern_20200331_null_1":"test",
"epi_isl_451893_Bern_20200407_null_2":"test",
"epi_isl_451901_Valais_20200407_null_3":"test",
"epi_isl_451913_Vaud_20200407_null_2":"test",
"epi_isl_452292_Michigan_20200316_null_2":"test",
"epi_isl_452466_Andalusia_20200311_null_1":"test",
"epi_isl_452536_Navarra_20200311_null_3":"test",
"epi_isl_452945_England_20200515_null_2":"test",
"epi_isl_453009_Scotland_20200403_null_1":"test",
"epi_isl_453192_Scotland_20200424_null_7":"test",
"epi_isl_453574_England_20200424_null_1":"test",
"epi_isl_453741_England_20200422_null_1":"test",
"epi_isl_453857_Portugal_20200327_null_1":"test",
"epi_isl_453882_Portugal_20200328_null_1":"test",
"epi_isl_453908_Portugal_20200329_null_2":"test",
"epi_isl_453928_Portugal_20200330_null_1":"test",
"epi_isl_453950_Portugal_20200331_null_14":"test",
"epi_isl_453990_Portugal_20200405_null_6":"test",
"epi_isl_454016_Portugal_20200313_null_2":"test",
"epi_isl_454097_Portugal_20200320_null_4":"test",
"epi_isl_454176_Portugal_20200404_null_1":"test",
"epi_isl_454259_Portugal_20200407_null_1":"test",
"epi_isl_454308_Portugal_20200327_null_1":"test",
"epi_isl_454396_Pennsylvania_20200101_null_2":"test",
"epi_isl_454499_Nur_Sultan_20200416_null_21":"test",
"epi_isl_454611_California_20200416_null_1":"test",
"epi_isl_455107_Vastra_Gotaland_20200512_null_23":"test",
"epi_isl_455193_Netherlands_20200101_null_48":"test",
"epi_isl_455238_Netherlands_20200407_null_6":"test",
"epi_isl_455438_Quintana_Roo_20200314_null_32513":"test",
"epi_isl_455472_Buzau_20200513_null_1":"test"
}
},
"timers":{
"Model fitting":{
"order":1,
"timer":2
},
"Primary SLAC analysis":{
"order":2,
"timer":1
},
"Total time":{
"order":0,
"timer":4
}
}
}