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[0, 0, 0.8, 0, 0.2, 0, 0.6666666666666666, 0, 0, -9.840424106728481, -9.840424106728481],
[1.910870065305863, 0, 1, 1.321132711192049, 0, 0, 0.6666666666666666, 0, 0.001162873462452648, -10.57949224568073, -10.57953790686733],
[0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0],
[0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0],
[0, 0, 0.8, 0, 0.2, 0, 0.6666666666666666, 0, 0, -11.18628173460263, -11.18628173460263]
]
},
"headers": [
["alpha;", "Synonymous substitution rate at a site"],
["β-", "Non-synonymous substitution rate at a site for the negative/neutral evolution component"],
["p-", "Mixture distribution weight allocated to β-; loosely -- the proportion of the tree evolving neutrally or under negative selection"],
["β+", "Non-synonymous substitution rate at a site for the positive/neutral evolution component"],
["p+", "Mixture distribution weight allocated to β+; loosely -- the proportion of the tree evolving neutrally or under positive selection"],
["LRT", "Likelihood ratio test statistic for episodic diversification, i.e., p+ > 0 and β+ > α"],
["p-value", "Asymptotic p-value for episodic diversification, i.e., p+ > 0 and β+ > α"],
["# branches under selection", "The (very approximate and rough) estimate of how many branches may have been under selection at this site, i.e., had an empirical Bayes factor of 100 or more for the β+ rate"],
["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"],
["MEME LogL", "Site Log-likelihood under the MEME model"],
["FEL LogL", "Site Log-likelihood under the FEL model"]
]
},
"analysis":{
"authors":"Sergei L. Kosakovsky Pond, Steven Weaver",
"citation":"Detecting Individual Sites Subject to Episodic Diversifying Selection. _PLoS Genet_ 8(7): e1002764.",
"contact":"spond@temple.edu",
"info":"MEME (Mixed Effects Model of Evolution)\n estimates a site-wise synonymous (α) and a two-category mixture of non-synonymous\n (β-, with proportion p-, and β+ with proportion [1-p-]) rates, and\n uses a likelihood ratio test to determine if β+ > α at a site.\n The estimates aggregate information over a proportion of branches at a site,\n so the signal is derived from\n episodic diversification, which is a combination of strength of selection [effect size] and\n the proportion of the tree affected. A subset of branches can be selected\n for testing as well, in which case an additional (nuisance) parameter will be\n inferred -- the non-synonymous rate on branches NOT selected for testing. Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
"requirements":"in-frame codon alignment and a phylogenetic tree",
"version":"2.1.2"
},
"branch attributes":{
"0":{
"Node54":{
"EBF site 10 (partition 1)":1,
"EBF site 100 (partition 1)":0.9891455034306307,
"EBF site 101 (partition 1)":1,
"EBF site 102 (partition 1)":1,
"EBF site 103 (partition 1)":1,
"EBF site 104 (partition 1)":1,
"EBF site 105 (partition 1)":1,
"EBF site 107 (partition 1)":1,
"EBF site 108 (partition 1)":1,
"EBF site 109 (partition 1)":1,
"EBF site 116 (partition 1)":1,
"EBF site 121 (partition 1)":1,
"EBF site 123 (partition 1)":1,
"EBF site 124 (partition 1)":1,
"EBF site 126 (partition 1)":1,
"EBF site 128 (partition 1)":1,
"EBF site 129 (partition 1)":1,
"EBF site 131 (partition 1)":1,
"EBF site 133 (partition 1)":1,
"EBF site 134 (partition 1)":1,
"EBF site 14 (partition 1)":1,
"EBF site 141 (partition 1)":1,
"EBF site 143 (partition 1)":1,
"EBF site 144 (partition 1)":1,
"EBF site 145 (partition 1)":1,
"EBF site 146 (partition 1)":1,
"EBF site 147 (partition 1)":1,
"EBF site 148 (partition 1)":1,
"EBF site 15 (partition 1)":1,
"EBF site 152 (partition 1)":1,
"EBF site 153 (partition 1)":1,
"EBF site 154 (partition 1)":0.9917473356175981,
"EBF site 155 (partition 1)":1,
"EBF site 156 (partition 1)":1,
"EBF site 158 (partition 1)":1,
"EBF site 159 (partition 1)":1,
"EBF site 16 (partition 1)":1,
"EBF site 160 (partition 1)":1,
"EBF site 169 (partition 1)":1,
"EBF site 17 (partition 1)":1,
"EBF site 172 (partition 1)":1,
"EBF site 176 (partition 1)":0.9891455034306307,
"EBF site 177 (partition 1)":1,
"EBF site 182 (partition 1)":1,
"EBF site 186 (partition 1)":1,
"EBF site 187 (partition 1)":1,
"EBF site 188 (partition 1)":1,
"EBF site 189 (partition 1)":1,
"EBF site 19 (partition 1)":1,
"EBF site 190 (partition 1)":1,
"EBF site 191 (partition 1)":1,
"EBF site 192 (partition 1)":0.9891455034306307,
"EBF site 194 (partition 1)":1,
"EBF site 195 (partition 1)":1,
"EBF site 198 (partition 1)":1,
"EBF site 2 (partition 1)":1,
"EBF site 21 (partition 1)":1,
"EBF site 26 (partition 1)":1,
"EBF site 27 (partition 1)":1,
"EBF site 3 (partition 1)":1,
"EBF site 33 (partition 1)":1,
"EBF site 34 (partition 1)":1,
"EBF site 35 (partition 1)":1,
"EBF site 36 (partition 1)":1,
"EBF site 37 (partition 1)":1,
"EBF site 4 (partition 1)":1,
"EBF site 41 (partition 1)":1,
"EBF site 47 (partition 1)":1,
"EBF site 51 (partition 1)":1,
"EBF site 53 (partition 1)":1,
"EBF site 57 (partition 1)":1,
"EBF site 59 (partition 1)":1,
"EBF site 61 (partition 1)":1,
"EBF site 63 (partition 1)":1,
"EBF site 7 (partition 1)":1,
"EBF site 71 (partition 1)":1,
"EBF site 72 (partition 1)":1,
"EBF site 74 (partition 1)":0.9908491842087517,
"EBF site 76 (partition 1)":1,
"EBF site 77 (partition 1)":1,
"EBF site 78 (partition 1)":1,
"EBF site 79 (partition 1)":1,
"EBF site 8 (partition 1)":1,
"EBF site 81 (partition 1)":1,
"EBF site 83 (partition 1)":1,
"EBF site 85 (partition 1)":1,
"EBF site 86 (partition 1)":1,
"EBF site 89 (partition 1)":1,
"EBF site 9 (partition 1)":1,
"EBF site 91 (partition 1)":1,
"EBF site 93 (partition 1)":1,
"EBF site 95 (partition 1)":1,
"Global MG94xREV":0.00182567116974515,
"Nucleotide GTR":0.001684129345510245
},
"epi_isl_406592_Guandong_20200113_null_1":{
"Global MG94xREV":0.00171711630789941,
"Nucleotide GTR":0.001687849054547631,
"original name":"epi_isl_406592_Guandong_20200113_null_1"
},
"epi_isl_406799_Wuhan_20191231_null_1":{
"Global MG94xREV":0.01041348301996476,
"Nucleotide GTR":0.01024350952875595,
"original name":"epi_isl_406799_Wuhan_20191231_null_1"
},
"epi_isl_411929_South_Korea_20200101_null_1":{
"Global MG94xREV":0.001715971933849925,
"Nucleotide GTR":0.001685186423201427,
"original name":"epi_isl_411929_South_Korea_20200101_null_1"
},
"epi_isl_413870_Guangdong_20200228_null_1":{
"Global MG94xREV":0.001712906446824577,
"Nucleotide GTR":0.001684329829585226,
"original name":"epi_isl_413870_Guangdong_20200228_null_1"
},
"epi_isl_414008_England_20200227_null_1":{
"Global MG94xREV":0.001713456197520383,
"Nucleotide GTR":0.001686040044419215,
"original name":"epi_isl_414008_England_20200227_null_1"
},
"epi_isl_415537_Wales_20200308_null_1":{
"Global MG94xREV":0.001717327918519321,
"Nucleotide GTR":0.00169300010124664,
"original name":"epi_isl_415537_Wales_20200308_null_1"
},
"epi_isl_417445_Lombardy_20200224_null_1":{
"Global MG94xREV":0.003451786057845491,
"Nucleotide GTR":0.003399187439873544,
"original name":"epi_isl_417445_Lombardy_20200224_null_1"
},
"epi_isl_417919_Kuala_Lumpur_20200314_null_1":{
"Global MG94xREV":0.001714324532994884,
"Nucleotide GTR":0.001685240158457795,
"original name":"epi_isl_417919_Kuala_Lumpur_20200314_null_1"
},
"epi_isl_418081_Washington_20200315_null_2":{
"Global MG94xREV":0.001715125103369482,
"Nucleotide GTR":0.001685812346910773,
"original name":"epi_isl_418081_Washington_20200315_null_2"
},
"epi_isl_418385_Finland_20200313_null_1":{
"Global MG94xREV":0.001712601466066502,
"Nucleotide GTR":0.001683699627977668,
"original name":"epi_isl_418385_Finland_20200313_null_1"
},
"epi_isl_418697_England_20200316_null_2":{
"Global MG94xREV":0.001714389722901169,
"Nucleotide GTR":0.001685102212053374,
"original name":"epi_isl_418697_England_20200316_null_2"
},
"epi_isl_419246_Hong_Kong_20200223_null_1":{
"Global MG94xREV":0.001712480576954707,
"Nucleotide GTR":0.001685245109968572,
"original name":"epi_isl_419246_Hong_Kong_20200223_null_1"
},
"epi_isl_419657_Austria_20200303_null_1":{
"Global MG94xREV":0.001714081096657893,
"Nucleotide GTR":0.001685102242660748,
"original name":"epi_isl_419657_Austria_20200303_null_1"
},
"epi_isl_419986_Victoria_20200323_null_1":{
"Global MG94xREV":0.00171566024858894,
"Nucleotide GTR":0.001684118506598571,
"original name":"epi_isl_419986_Victoria_20200323_null_1"
},
"epi_isl_420031_Kinshasa_20200321_null_1":{
"Global MG94xREV":0.001714504568302613,
"Nucleotide GTR":0.001686119527608923,
"original name":"epi_isl_420031_Kinshasa_20200321_null_1"
},
"epi_isl_420318_Arbre_20200307_null_1":{
"Global MG94xREV":0.001712757330690116,
"Nucleotide GTR":0.001683699567996898,
"original name":"epi_isl_420318_Arbre_20200307_null_1"
},
"epi_isl_420320_Ukkel_20200309_null_1":{
"Global MG94xREV":0.001717988151017766,
"Nucleotide GTR":0.00169023738442786,
"original name":"epi_isl_420320_Ukkel_20200309_null_1"
},
"epi_isl_420388_Vilvoorde_20200324_null_1":{
"Global MG94xREV":0.001711693081566573,
"Nucleotide GTR":0.00168423131462089,
"original name":"epi_isl_420388_Vilvoorde_20200324_null_1"
},
"epi_isl_420498_England_20200322_null_1":{
"Global MG94xREV":0.001713817786601368,
"Nucleotide GTR":0.00168472995468708,
"original name":"epi_isl_420498_England_20200322_null_1"
},
"epi_isl_420701_England_20200327_null_3":{
"Global MG94xREV":0.001715972032809883,
"Nucleotide GTR":0.001685186526450333,
"original name":"epi_isl_420701_England_20200327_null_3"
},
"epi_isl_421177_Madrid_20200327_null_1":{
"Global MG94xREV":0.00171375207181935,
"Nucleotide GTR":0.001684760801992673,
"original name":"epi_isl_421177_Madrid_20200327_null_1"
},
"epi_isl_421393_New_York_20200318_null_2":{
"Global MG94xREV":0.001714972616912058,
"Nucleotide GTR":0.001685556531011507,
"original name":"epi_isl_421393_New_York_20200318_null_2"
},
"epi_isl_421482_Portugal_20200318_null_1":{
"Global MG94xREV":0.0017136088456324,
"Nucleotide GTR":0.001684760979480253,
"original name":"epi_isl_421482_Portugal_20200318_null_1"
},
"epi_isl_421731_New_York_20200318_null_1":{
"Global MG94xREV":0.001715925543878544,
"Nucleotide GTR":0.001686040096719001,
"original name":"epi_isl_421731_New_York_20200318_null_1"
},
"epi_isl_421789_England_20200325_null_1":{
"Global MG94xREV":0.001713838748591088,
"Nucleotide GTR":0.001686040126120735,
"original name":"epi_isl_421789_England_20200325_null_1"
},
"epi_isl_421980_England_20200331_null_1":{
"Global MG94xREV":0.001714742990080724,
"Nucleotide GTR":0.001686297874712104,
"original name":"epi_isl_421980_England_20200331_null_1"
},
"epi_isl_422281_Wales_20200327_null_2":{
"Global MG94xREV":0.001712813958335964,
"Nucleotide GTR":0.001684761089847688,
"original name":"epi_isl_422281_Wales_20200327_null_2"
},
"epi_isl_422656_Netherlands_20200318_null_2":{
"Global MG94xREV":0.001714138676394145,
"Nucleotide GTR":0.001686040108789803,
"original name":"epi_isl_422656_Netherlands_20200318_null_2"
},
"epi_isl_422717_Netherlands_20200322_null_5":{
"Global MG94xREV":0.00171345617675915,
"Nucleotide GTR":0.001686040121007801,
"original name":"epi_isl_422717_Netherlands_20200322_null_5"
},
"epi_isl_423012_Washington_20200319_null_1":{
"Global MG94xREV":0.001712973484123351,
"Nucleotide GTR":0.001684760983945061,
"original name":"epi_isl_423012_Washington_20200319_null_1"
},
"epi_isl_423085_England_20200325_null_1":{
"Global MG94xREV":0.00171398019007617,
"Nucleotide GTR":0.001684724063409937,
"original name":"epi_isl_423085_England_20200325_null_1"
},
"epi_isl_423389_England_20200330_null_1":{
"Global MG94xREV":0.001715669241863612,
"Nucleotide GTR":0.001686468617094191,
"original name":"epi_isl_423389_England_20200330_null_1"
},
"epi_isl_423898_England_20200318_null_1":{
"Global MG94xREV":0.001714884541361888,
"Nucleotide GTR":0.001684122224777891,
"original name":"epi_isl_423898_England_20200318_null_1"
},
"epi_isl_423992_England_20200321_null_1":{
"Global MG94xREV":0.001712785205007438,
"Nucleotide GTR":0.001684760880694416,
"original name":"epi_isl_423992_England_20200321_null_1"
},
"epi_isl_424018_England_20200312_null_8":{
"Global MG94xREV":0.001713449283789552,
"Nucleotide GTR":0.001686040109600273,
"original name":"epi_isl_424018_England_20200312_null_8"
},
"epi_isl_424171_Washington_20200319_null_1":{
"Global MG94xREV":0.0051842331871383,
"Nucleotide GTR":0.005092616637974206,
"original name":"epi_isl_424171_Washington_20200319_null_1"
},
"epi_isl_424210_Washington_20200320_null_1":{
"Global MG94xREV":0.001713895969333803,
"Nucleotide GTR":0.001685340796110561,
"original name":"epi_isl_424210_Washington_20200320_null_1"
},
"epi_isl_424325_Washington_20200324_null_3":{
"Global MG94xREV":0.001714238777767818,
"Nucleotide GTR":0.001684730038644415,
"original name":"epi_isl_424325_Washington_20200324_null_3"
},
"epi_isl_424348_Mexico_City_20200313_null_1":{
"Global MG94xREV":0.001715905383675921,
"Nucleotide GTR":0.0016851022616121,
"original name":"epi_isl_424348_Mexico_City_20200313_null_1"
},
"epi_isl_424485_Reykjavik_20200320_null_5":{
"Global MG94xREV":0.001713694465500618,
"Nucleotide GTR":0.001685186274067706,
"original name":"epi_isl_424485_Reykjavik_20200320_null_5"
},
"epi_isl_424636_Li_ge_20200403_null_1":{
"Global MG94xREV":0.00171401435220078,
"Nucleotide GTR":0.001685102166086749,
"original name":"epi_isl_424636_Li_ge_20200403_null_1"
},
"epi_isl_426025_New_York_20200303_null_1":{
"Global MG94xREV":0.001713817781331732,
"Nucleotide GTR":0.001684730028615249,
"original name":"epi_isl_426025_New_York_20200303_null_1"
},
"epi_isl_426028_New_York_20200304_null_2":{
"Global MG94xREV":0.001713824806426499,
"Nucleotide GTR":0.0016847300497041,
"original name":"epi_isl_426028_New_York_20200304_null_2"
},
"epi_isl_426787_Victoria_20200323_null_2":{
"Global MG94xREV":0.001711605848818369,
"Nucleotide GTR":0.001684523785845984,
"original name":"epi_isl_426787_Victoria_20200323_null_2"
},
"epi_isl_426867_Victoria_20200326_null_1":{
"Global MG94xREV":0.001715668645289444,
"Nucleotide GTR":0.001685812397658167,
"original name":"epi_isl_426867_Victoria_20200326_null_1"
},
"epi_isl_427082_Victoria_20200328_null_1":{
"Global MG94xREV":0.001713717414247465,
"Nucleotide GTR":0.00168510224220799,
"original name":"epi_isl_427082_Victoria_20200328_null_1"
},
"epi_isl_427091_Victoria_20200403_null_2":{
"Global MG94xREV":0.001714303662689111,
"Nucleotide GTR":0.001685481821856425,
"original name":"epi_isl_427091_Victoria_20200403_null_2"
},
"epi_isl_427305_Santa_Catarina_20200310_null_1":{
"Global MG94xREV":0.001715905365614182,
"Nucleotide GTR":0.001685102242660748,
"original name":"epi_isl_427305_Santa_Catarina_20200310_null_1"
},
"epi_isl_427387_Liege_20200407_null_2":{
"Global MG94xREV":0.001715911456910307,
"Nucleotide GTR":0.001686024988392689,
"original name":"epi_isl_427387_Liege_20200407_null_2"
},
"epi_isl_427480_New_York_20200401_null_1":{
"Global MG94xREV":0.001714426118162623,
"Nucleotide GTR":0.001686119559677101,
"original name":"epi_isl_427480_New_York_20200401_null_1"
},
"epi_isl_427634_New_York_20200406_null_1":{
"Global MG94xREV":0.001713717395699839,
"Nucleotide GTR":0.001685102188726994,
"original name":"epi_isl_427634_New_York_20200406_null_1"
},
"epi_isl_427674_New_South_Wales_20200322_null_1":{
"Global MG94xREV":0.0017159011880697,
"Nucleotide GTR":0.001685102206878628,
"original name":"epi_isl_427674_New_South_Wales_20200322_null_1"
},
"epi_isl_428349_Ile_De_France_20200323_null_2":{
"Global MG94xREV":0.001719258971712018,
"Nucleotide GTR":0.001691168755019208,
"original name":"epi_isl_428349_Ile_De_France_20200323_null_2"
},
"epi_isl_428677_Madrid_20200311_null_1":{
"Global MG94xREV":0.001715966171019275,
"Nucleotide GTR":0.001685574990219825,
"original name":"epi_isl_428677_Madrid_20200311_null_1"
},
"epi_isl_428704_Madrid_20200311_null_3":{
"Global MG94xREV":0.00171720336506278,
"Nucleotide GTR":0.00168738835354655,
"original name":"epi_isl_428704_Madrid_20200311_null_3"
},
"epi_isl_428720_Ankara_20200321_null_1":{
"Global MG94xREV":0.001714272517032288,
"Nucleotide GTR":0.001685481827387845,
"original name":"epi_isl_428720_Ankara_20200321_null_1"
},
"epi_isl_428729_Wisconsin_20200402_null_1":{
"Global MG94xREV":0.001713228565653899,
"Nucleotide GTR":0.001683699627977668,
"original name":"epi_isl_428729_Wisconsin_20200402_null_1"
},
"epi_isl_428918_Novosibirsk_Region_20200327_null_5":{
"Global MG94xREV":0.001714081098775095,
"Nucleotide GTR":0.001685102280179871,
"original name":"epi_isl_428918_Novosibirsk_Region_20200327_null_5"
},
"epi_isl_429013_California_20200328_null_2":{
"Global MG94xREV":0.001715692709665579,
"Nucleotide GTR":0.001684887310150966,
"original name":"epi_isl_429013_California_20200328_null_2"
},
"epi_isl_429023_California_20200331_null_2":{
"Global MG94xREV":0.001714758668752686,
"Nucleotide GTR":0.00168578102788007,
"original name":"epi_isl_429023_California_20200331_null_2"
},
"epi_isl_429470_Unknown_20200323_null_1":{
"Global MG94xREV":0.001715332475017886,
"Nucleotide GTR":0.00168548184604872,
"original name":"epi_isl_429470_Unknown_20200323_null_1"
},
"epi_isl_429571_Unknown_20200326_null_1":{
"Global MG94xREV":0.001713520194599148,
"Nucleotide GTR":0.001683699627977668,
"original name":"epi_isl_429571_Unknown_20200326_null_1"
},
"epi_isl_429694_Minas_gerais_20200318_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"original name":"epi_isl_429694_Minas_gerais_20200318_null_1"
},
"epi_isl_430228_Washington_20200323_null_1":{
"Global MG94xREV":0.00171366316149092,
"Nucleotide GTR":0.001684399405755475,
"original name":"epi_isl_430228_Washington_20200323_null_1"
},
"epi_isl_430482_Victoria_20200331_null_3":{
"Global MG94xREV":0.001715029159698091,
"Nucleotide GTR":0.001685412937546021,
"original name":"epi_isl_430482_Victoria_20200331_null_3"
},
"epi_isl_430593_Victoria_20200408_null_3":{
"Global MG94xREV":0.001715905326635339,
"Nucleotide GTR":0.001685102201955106,
"original name":"epi_isl_430593_Victoria_20200408_null_3"
},
"epi_isl_430909_USA_20200408_null_1":{
"Global MG94xREV":0.001714509357698397,
"Nucleotide GTR":0.001686468490143855,
"original name":"epi_isl_430909_USA_20200408_null_1"
},
"epi_isl_431938_Wales_20200301_null_2":{
"Global MG94xREV":0.001714081112818203,
"Nucleotide GTR":0.001685102179314861,
"original name":"epi_isl_431938_Wales_20200301_null_2"
},
"epi_isl_432107_Wales_20200325_null_2":{
"Global MG94xREV":0.0017116431330514,
"Nucleotide GTR":0.001684399362945685,
"original name":"epi_isl_432107_Wales_20200325_null_2"
},
"epi_isl_432228_Wales_20200408_null_2":{
"Global MG94xREV":0.001714427510926616,
"Nucleotide GTR":0.001685482385615575,
"original name":"epi_isl_432228_Wales_20200408_null_2"
},
"epi_isl_432385_Wales_20200401_null_1":{
"Global MG94xREV":0.001714427593488098,
"Nucleotide GTR":0.001685482025523338,
"original name":"epi_isl_432385_Wales_20200401_null_1"
},
"epi_isl_432600_England_20200329_null_1":{
"Global MG94xREV":0.001711502730065582,
"Nucleotide GTR":0.001684864918551839,
"original name":"epi_isl_432600_England_20200329_null_1"
},
"epi_isl_432721_England_20200402_null_4":{
"Global MG94xREV":0.001713997709867114,
"Nucleotide GTR":0.001685412977135783,
"original name":"epi_isl_432721_England_20200402_null_4"
},
"epi_isl_432741_England_20200402_null_2":{
"Global MG94xREV":0.001715876000573533,
"Nucleotide GTR":0.001685481779795206,
"original name":"epi_isl_432741_England_20200402_null_2"
},
"epi_isl_432817_England_20200323_null_2":{
"Global MG94xREV":0.001714303653855284,
"Nucleotide GTR":0.001685481945511606,
"original name":"epi_isl_432817_England_20200323_null_2"
},
"epi_isl_433057_England_20200404_null_1":{
"Global MG94xREV":0.001715905336922496,
"Nucleotide GTR":0.001685102212053374,
"original name":"epi_isl_433057_England_20200404_null_1"
},
"epi_isl_433296_Scotland_20200323_null_1":{
"Global MG94xREV":0.001717073800963455,
"Nucleotide GTR":0.001688011056226994,
"original name":"epi_isl_433296_Scotland_20200323_null_1"
},
"epi_isl_433360_Scotland_20200328_null_1":{
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"Nucleotide GTR":0.001686119541320995,
"original name":"epi_isl_433360_Scotland_20200328_null_1"
},
"epi_isl_433488_England_20200101_null_2":{
"Global MG94xREV":0.001712757312714829,
"Nucleotide GTR":0.001683699568259704,
"original name":"epi_isl_433488_England_20200101_null_2"
},
"epi_isl_433522_Scotland_20200330_null_2":{
"Global MG94xREV":0.001714234869822184,
"Nucleotide GTR":0.001685102242660748,
"original name":"epi_isl_433522_Scotland_20200330_null_2"
},
"epi_isl_433576_Scotland_20200402_null_2":{
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"Nucleotide GTR":0.001683699649569523,
"original name":"epi_isl_433576_Scotland_20200402_null_2"
},
"epi_isl_433610_Scotland_20200404_null_9":{
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"Nucleotide GTR":0.001685102228979878,
"original name":"epi_isl_433610_Scotland_20200404_null_9"
},
"epi_isl_433733_England_20200405_null_4":{
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"Nucleotide GTR":0.001686359397990087,
"original name":"epi_isl_433733_England_20200405_null_4"
},
"epi_isl_433749_England_20200406_null_2":{
"Global MG94xREV":0.001713079206411499,
"Nucleotide GTR":0.00168369970819076,
"original name":"epi_isl_433749_England_20200406_null_2"
},
"epi_isl_433819_England_20200327_null_3":{
"Global MG94xREV":0.001712395497623817,
"Nucleotide GTR":0.001685240153631452,
"original name":"epi_isl_433819_England_20200327_null_3"
},
"epi_isl_434038_England_20200414_null_2":{
"Global MG94xREV":0.001714426139907564,
"Nucleotide GTR":0.001686119537221303,
"original name":"epi_isl_434038_England_20200414_null_2"
},
"epi_isl_434155_Washington_20200330_null_3":{
"Global MG94xREV":0.001715368025553477,
"Nucleotide GTR":0.001686359607365038,
"original name":"epi_isl_434155_Washington_20200330_null_3"
},
"epi_isl_434248_Washington_20200401_null_1":{
"Global MG94xREV":0.001714426164303055,
"Nucleotide GTR":0.001686119464153401,
"original name":"epi_isl_434248_Washington_20200401_null_1"
},
"epi_isl_434249_Washington_20200402_null_1":{
"Global MG94xREV":0.001715585806673582,
"Nucleotide GTR":0.001686119464153401,
"original name":"epi_isl_434249_Washington_20200402_null_1"
},
"epi_isl_434329_Washington_20200325_null_3":{
"Global MG94xREV":0.001713710483288257,
"Nucleotide GTR":0.001685102201955106,
"original name":"epi_isl_434329_Washington_20200325_null_3"
},
"epi_isl_434363_Ghent_20200330_null_13":{
"Global MG94xREV":0.001715585750709962,
"Nucleotide GTR":0.001686119550150577,
"original name":"epi_isl_434363_Ghent_20200330_null_13"
},
"epi_isl_434385_Antwerp_20200411_null_1":{
"Global MG94xREV":0.001715905399533611,
"Nucleotide GTR":0.001685102280179871,
"original name":"epi_isl_434385_Antwerp_20200411_null_1"
},
"epi_isl_434632_Occitanie_20200409_null_1":{
"Global MG94xREV":0.001713717381654373,
"Nucleotide GTR":0.001685102157350335,
"original name":"epi_isl_434632_Occitanie_20200409_null_1"
},
"epi_isl_434648_Skane_20200316_null_6":{
"Global MG94xREV":0.001714094201556317,
"Nucleotide GTR":0.001685102198994802,
"original name":"epi_isl_434648_Skane_20200316_null_6"
},
"epi_isl_434656_Stockholm_20200330_null_3":{
"Global MG94xREV":0.001715893296739905,
"Nucleotide GTR":0.00168510217485979,
"original name":"epi_isl_434656_Stockholm_20200330_null_3"
},
"epi_isl_434666_Vasterbotten_20200408_null_1":{
"Global MG94xREV":0.001714427510989869,
"Nucleotide GTR":0.001685482403409398,
"original name":"epi_isl_434666_Vasterbotten_20200408_null_1"
},
"epi_isl_434838_Texas_20200321_null_1":{
"Global MG94xREV":0.001711852651005174,
"Nucleotide GTR":0.001685240225144964,
"original name":"epi_isl_434838_Texas_20200321_null_1"
},
"epi_isl_434875_Texas_20200324_null_3":{
"Global MG94xREV":0.001712935690018696,
"Nucleotide GTR":0.001684330819695731,
"original name":"epi_isl_434875_Texas_20200324_null_3"
},
"epi_isl_434980_Texas_20200331_null_1":{
"Global MG94xREV":0.001712647243931262,
"Nucleotide GTR":0.00168389984101284,
"original name":"epi_isl_434980_Texas_20200331_null_1"
},
"epi_isl_435025_Texas_20200403_null_11":{
"Global MG94xREV":0.001712512379795876,
"Nucleotide GTR":0.001684865948119541,
"original name":"epi_isl_435025_Texas_20200403_null_11"
},
"epi_isl_435029_Texas_20200403_null_84":{
"Global MG94xREV":0.00171513474467131,
"Nucleotide GTR":0.001686119464153401,
"original name":"epi_isl_435029_Texas_20200403_null_84"
},
"epi_isl_435165_Kinshasa_20200413_null_7":{
"Global MG94xREV":0.001714081108460961,
"Nucleotide GTR":0.001685102157350335,
"original name":"epi_isl_435165_Kinshasa_20200413_null_7"
},
"epi_isl_435399_Iowa_20200423_null_2":{
"Global MG94xREV":0.001714973903454705,
"Nucleotide GTR":0.001685551372554466,
"original name":"epi_isl_435399_Iowa_20200423_null_2"
},
"epi_isl_435457_Louisiana_20200402_null_1":{
"Global MG94xREV":0.001714373025652953,
"Nucleotide GTR":0.001685698458668287,
"original name":"epi_isl_435457_Louisiana_20200402_null_1"
},
"epi_isl_435461_Louisiana_20200403_null_1":{
"Global MG94xREV":0.001713671965463292,
"Nucleotide GTR":0.00168472996956327,
"original name":"epi_isl_435461_Louisiana_20200403_null_1"
},
"epi_isl_435534_New_York_20200420_null_2":{
"Global MG94xREV":0.001712702740108044,
"Nucleotide GTR":0.001683699689454332,
"original name":"epi_isl_435534_New_York_20200420_null_2"
},
"epi_isl_435588_California_20200302_null_1":{
"Global MG94xREV":0.01044309485435698,
"Nucleotide GTR":0.01027663194314871,
"original name":"epi_isl_435588_California_20200302_null_1"
},
"epi_isl_435664_California_20200316_null_2":{
"Global MG94xREV":0.001713531159928934,
"Nucleotide GTR":0.001683699575857956,
"original name":"epi_isl_435664_California_20200316_null_2"
},
"epi_isl_435689_Singapore_20200418_null_9":{
"Global MG94xREV":0.001715893366144593,
"Nucleotide GTR":0.001685102255098636,
"original name":"epi_isl_435689_Singapore_20200418_null_9"
},
"epi_isl_436107_New_Taipei_City_20200331_null_15818":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"original name":"epi_isl_436107_New_Taipei_City_20200331_null_15818"
}
},
"attributes":{
"EBF site 10 (partition 1)":{
"attribute type":"branch label",
"display order":12
},
"EBF site 100 (partition 1)":{
"attribute type":"branch label",
"display order":102
},
"EBF site 101 (partition 1)":{
"attribute type":"branch label",
"display order":103
},
"EBF site 102 (partition 1)":{
"attribute type":"branch label",
"display order":104
},
"EBF site 103 (partition 1)":{
"attribute type":"branch label",
"display order":105
},
"EBF site 104 (partition 1)":{
"attribute type":"branch label",
"display order":106
},
"EBF site 105 (partition 1)":{
"attribute type":"branch label",
"display order":107
},
"EBF site 107 (partition 1)":{
"attribute type":"branch label",
"display order":109
},
"EBF site 108 (partition 1)":{
"attribute type":"branch label",
"display order":110
},
"EBF site 109 (partition 1)":{
"attribute type":"branch label",
"display order":111
},
"EBF site 116 (partition 1)":{
"attribute type":"branch label",
"display order":118
},
"EBF site 121 (partition 1)":{
"attribute type":"branch label",
"display order":123
},
"EBF site 123 (partition 1)":{
"attribute type":"branch label",
"display order":125
},
"EBF site 124 (partition 1)":{
"attribute type":"branch label",
"display order":126
},
"EBF site 126 (partition 1)":{
"attribute type":"branch label",
"display order":128
},
"EBF site 128 (partition 1)":{
"attribute type":"branch label",
"display order":130
},
"EBF site 129 (partition 1)":{
"attribute type":"branch label",
"display order":131
},
"EBF site 131 (partition 1)":{
"attribute type":"branch label",
"display order":133
},
"EBF site 133 (partition 1)":{
"attribute type":"branch label",
"display order":135
},
"EBF site 134 (partition 1)":{
"attribute type":"branch label",
"display order":136
},
"EBF site 14 (partition 1)":{
"attribute type":"branch label",
"display order":16
},
"EBF site 141 (partition 1)":{
"attribute type":"branch label",
"display order":143
},
"EBF site 143 (partition 1)":{
"attribute type":"branch label",
"display order":145
},
"EBF site 144 (partition 1)":{
"attribute type":"branch label",
"display order":146
},
"EBF site 145 (partition 1)":{
"attribute type":"branch label",
"display order":147
},
"EBF site 146 (partition 1)":{
"attribute type":"branch label",
"display order":148
},
"EBF site 147 (partition 1)":{
"attribute type":"branch label",
"display order":149
},
"EBF site 148 (partition 1)":{
"attribute type":"branch label",
"display order":150
},
"EBF site 15 (partition 1)":{
"attribute type":"branch label",
"display order":17
},
"EBF site 152 (partition 1)":{
"attribute type":"branch label",
"display order":154
},
"EBF site 153 (partition 1)":{
"attribute type":"branch label",
"display order":155
},
"EBF site 154 (partition 1)":{
"attribute type":"branch label",
"display order":156
},
"EBF site 155 (partition 1)":{
"attribute type":"branch label",
"display order":157
},
"EBF site 156 (partition 1)":{
"attribute type":"branch label",
"display order":158
},
"EBF site 158 (partition 1)":{
"attribute type":"branch label",
"display order":160
},
"EBF site 159 (partition 1)":{
"attribute type":"branch label",
"display order":161
},
"EBF site 16 (partition 1)":{
"attribute type":"branch label",
"display order":18
},
"EBF site 160 (partition 1)":{
"attribute type":"branch label",
"display order":162
},
"EBF site 169 (partition 1)":{
"attribute type":"branch label",
"display order":171
},
"EBF site 17 (partition 1)":{
"attribute type":"branch label",
"display order":19
},
"EBF site 172 (partition 1)":{
"attribute type":"branch label",
"display order":174
},
"EBF site 176 (partition 1)":{
"attribute type":"branch label",
"display order":178
},
"EBF site 177 (partition 1)":{
"attribute type":"branch label",
"display order":179
},
"EBF site 182 (partition 1)":{
"attribute type":"branch label",
"display order":184
},
"EBF site 186 (partition 1)":{
"attribute type":"branch label",
"display order":188
},
"EBF site 187 (partition 1)":{
"attribute type":"branch label",
"display order":189
},
"EBF site 188 (partition 1)":{
"attribute type":"branch label",
"display order":190
},
"EBF site 189 (partition 1)":{
"attribute type":"branch label",
"display order":191
},
"EBF site 19 (partition 1)":{
"attribute type":"branch label",
"display order":21
},
"EBF site 190 (partition 1)":{
"attribute type":"branch label",
"display order":192
},
"EBF site 191 (partition 1)":{
"attribute type":"branch label",
"display order":193
},
"EBF site 192 (partition 1)":{
"attribute type":"branch label",
"display order":194
},
"EBF site 194 (partition 1)":{
"attribute type":"branch label",
"display order":196
},
"EBF site 195 (partition 1)":{
"attribute type":"branch label",
"display order":197
},
"EBF site 198 (partition 1)":{
"attribute type":"branch label",
"display order":200
},
"EBF site 2 (partition 1)":{
"attribute type":"branch label",
"display order":4
},
"EBF site 21 (partition 1)":{
"attribute type":"branch label",
"display order":23
},
"EBF site 26 (partition 1)":{
"attribute type":"branch label",
"display order":28
},
"EBF site 27 (partition 1)":{
"attribute type":"branch label",
"display order":29
},
"EBF site 3 (partition 1)":{
"attribute type":"branch label",
"display order":5
},
"EBF site 33 (partition 1)":{
"attribute type":"branch label",
"display order":35
},
"EBF site 34 (partition 1)":{
"attribute type":"branch label",
"display order":36
},
"EBF site 35 (partition 1)":{
"attribute type":"branch label",
"display order":37
},
"EBF site 36 (partition 1)":{
"attribute type":"branch label",
"display order":38
},
"EBF site 37 (partition 1)":{
"attribute type":"branch label",
"display order":39
},
"EBF site 4 (partition 1)":{
"attribute type":"branch label",
"display order":6
},
"EBF site 41 (partition 1)":{
"attribute type":"branch label",
"display order":43
},
"EBF site 47 (partition 1)":{
"attribute type":"branch label",
"display order":49
},
"EBF site 51 (partition 1)":{
"attribute type":"branch label",
"display order":53
},
"EBF site 53 (partition 1)":{
"attribute type":"branch label",
"display order":55
},
"EBF site 57 (partition 1)":{
"attribute type":"branch label",
"display order":59
},
"EBF site 59 (partition 1)":{
"attribute type":"branch label",
"display order":61
},
"EBF site 61 (partition 1)":{
"attribute type":"branch label",
"display order":63
},
"EBF site 63 (partition 1)":{
"attribute type":"branch label",
"display order":65
},
"EBF site 7 (partition 1)":{
"attribute type":"branch label",
"display order":9
},
"EBF site 71 (partition 1)":{
"attribute type":"branch label",
"display order":73
},
"EBF site 72 (partition 1)":{
"attribute type":"branch label",
"display order":74
},
"EBF site 74 (partition 1)":{
"attribute type":"branch label",
"display order":76
},
"EBF site 76 (partition 1)":{
"attribute type":"branch label",
"display order":78
},
"EBF site 77 (partition 1)":{
"attribute type":"branch label",
"display order":79
},
"EBF site 78 (partition 1)":{
"attribute type":"branch label",
"display order":80
},
"EBF site 79 (partition 1)":{
"attribute type":"branch label",
"display order":81
},
"EBF site 8 (partition 1)":{
"attribute type":"branch label",
"display order":10
},
"EBF site 81 (partition 1)":{
"attribute type":"branch label",
"display order":83
},
"EBF site 83 (partition 1)":{
"attribute type":"branch label",
"display order":85
},
"EBF site 85 (partition 1)":{
"attribute type":"branch label",
"display order":87
},
"EBF site 86 (partition 1)":{
"attribute type":"branch label",
"display order":88
},
"EBF site 89 (partition 1)":{
"attribute type":"branch label",
"display order":91
},
"EBF site 9 (partition 1)":{
"attribute type":"branch label",
"display order":11
},
"EBF site 91 (partition 1)":{
"attribute type":"branch label",
"display order":93
},
"EBF site 93 (partition 1)":{
"attribute type":"branch label",
"display order":95
},
"EBF site 95 (partition 1)":{
"attribute type":"branch label",
"display order":97
},
"Global MG94xREV":{
"attribute type":"branch length",
"display order":1
},
"Nucleotide GTR":{
"attribute type":"branch length",
"display order":0
},
"original name":{
"attribute type":"node label",
"display order":-1
}
}
},
"data partitions":{
"0":{
"coverage": [
[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197]
],
"name":"meme.filter.default"
}
},
"fits":{
"Global MG94xREV":{
"AIC-c":3669.768360815089,
"Equilibrium frequencies": [
[0.03814216089722407],
[0.0135314674014616],
[0.02396878793733039],
[0.05185484781270212],
[0.02906869692140587],
[0.01031252859151977],
[0.01826696274500834],
[0.03951933554668548],
[0.01036682530925402],
[0.003677776912189238],
[0.00651458206813194],
[0.01409385666849723],
[0.02824230131901381],
[0.01001935314232038],
[0.01774765024461146],
[0.03839583815725872],
[0.01521339338386967],
[0.005397165021513666],
[0.009560197724709819],
[0.02068283967342672],
[0.01159434890470545],
[0.004113258151994526],
[0.007285966070908404],
[0.01576269366491574],
[0.004134914956614744],
[0.001466919168371514],
[0.002598408097565534],
[0.00562147976805709],
[0.01126473251449182],
[0.003996322107097087],
[0.007078832936029467],
[0.01531457516955425],
[0.03589821720400314],
[0.01273539685324722],
[0.02255867877568515],
[0.0488041722354641],
[0.02735855471675468],
[0.009705831620248136],
[0.01719229799393635],
[0.03719437121130823],
[0.009756934004613317],
[0.003461409404081401],
[0.006131322310376087],
[0.01326470016450021],
[0.02658077684226455],
[0.009429903993006462],
[0.01670353719755058],
[0.03613697036235141],
[0.00828875618553042],
[0.03176390097284255],
[0.01780615023220516],
[0.006316981936651302],
[0.01118950339614956],
[0.02420773203985693],
[0.002252837421506612],
[0.003990534124003552],
[0.008633250051385209],
[0.01729993819637803],
[0.006137396105647141],
[0.01087139638142749],
[0.02351952907858516]
],
"Log Likelihood":-1707.133395260676,
"Rate Distributions":{
"non-synonymous/synonymous rate ratio for *background*": [
[0.6630105417933594, 1]
],
"non-synonymous/synonymous rate ratio for *test*": [
[0, 1]
]
},
"display order":1,
"estimated parameters":127
},
"Nucleotide GTR":{
"AIC-c":3968.247868074352,
"Equilibrium frequencies": [
[0.3249303578534913],
[0.1796461260599382],
[0.2035387394006184],
[0.2918847766859522]
],
"Log Likelihood":-1758.342995990059,
"Rate Distributions":{
"Substitution rate from nucleotide A to nucleotide C":0.1013781865046701,
"Substitution rate from nucleotide A to nucleotide G":1,
"Substitution rate from nucleotide A to nucleotide T":0.2314812628958166,
"Substitution rate from nucleotide C to nucleotide G":0.2154092957214933,
"Substitution rate from nucleotide C to nucleotide T":1.946078832123303,
"Substitution rate from nucleotide G to nucleotide T":0.6735569324495322
},
"display order":0,
"estimated parameters":225
}
},
"input":{
"file name":"/data/shares/veg/SARS-CoV-2/SARS-CoV-2/data/fasta/2020-05-06/sequences.nsp8.compressed.fas",
"number of sequences":110,
"number of sites":198,
"partition count":1,
"trees":{
"0":"(epi_isl_431938_Wales_20200301_null_2,epi_isl_426867_Victoria_20200326_null_1,epi_isl_411929_South_Korea_20200101_null_1,epi_isl_432385_Wales_20200401_null_1,epi_isl_433749_England_20200406_null_2,epi_isl_420388_Vilvoorde_20200324_null_1,epi_isl_429013_California_20200328_null_2,epi_isl_424171_Washington_20200319_null_1,epi_isl_428677_Madrid_20200311_null_1,epi_isl_434329_Washington_20200325_null_3,epi_isl_427082_Victoria_20200328_null_1,epi_isl_420701_England_20200327_null_3,epi_isl_428720_Ankara_20200321_null_1,epi_isl_430482_Victoria_20200331_null_3,epi_isl_434648_Skane_20200316_null_6,epi_isl_427634_New_York_20200406_null_1,epi_isl_422656_Netherlands_20200318_null_2,epi_isl_432817_England_20200323_null_2,epi_isl_434038_England_20200414_null_2,epi_isl_418385_Finland_20200313_null_1,epi_isl_424018_England_20200312_null_8,epi_isl_428704_Madrid_20200311_null_3,epi_isl_434249_Washington_20200402_null_1,epi_isl_426025_New_York_20200303_null_1,epi_isl_421177_Madrid_20200327_null_1,epi_isl_434666_Vasterbotten_20200408_null_1,epi_isl_430228_Washington_20200323_null_1,epi_isl_433360_Scotland_20200328_null_1,epi_isl_424636_Li_ge_20200403_null_1,epi_isl_413870_Guangdong_20200228_null_1,epi_isl_420320_Ukkel_20200309_null_1,epi_isl_434248_Washington_20200401_null_1,epi_isl_424325_Washington_20200324_null_3,epi_isl_423898_England_20200318_null_1,epi_isl_435399_Iowa_20200423_null_2,epi_isl_433610_Scotland_20200404_null_9,epi_isl_420498_England_20200322_null_1,epi_isl_426787_Victoria_20200323_null_2,epi_isl_423085_England_20200325_null_1,epi_isl_406799_Wuhan_20191231_null_1,epi_isl_436107_New_Taipei_City_20200331_null_15818,epi_isl_433057_England_20200404_null_1,epi_isl_418697_England_20200316_null_2,epi_isl_434875_Texas_20200324_null_3,(epi_isl_429694_Minas_gerais_20200318_null_1,epi_isl_435588_California_20200302_null_1)Node54,epi_isl_429023_California_20200331_null_2,epi_isl_428918_Novosibirsk_Region_20200327_null_5,epi_isl_428729_Wisconsin_20200402_null_1,epi_isl_420031_Kinshasa_20200321_null_1,epi_isl_421789_England_20200325_null_1,epi_isl_427091_Victoria_20200403_null_2,epi_isl_434385_Antwerp_20200411_null_1,epi_isl_420318_Arbre_20200307_null_1,epi_isl_417919_Kuala_Lumpur_20200314_null_1,epi_isl_421731_New_York_20200318_null_1,epi_isl_429470_Unknown_20200323_null_1,epi_isl_433819_England_20200327_null_3,epi_isl_426028_New_York_20200304_null_2,epi_isl_406592_Guandong_20200113_null_1,epi_isl_435457_Louisiana_20200402_null_1,epi_isl_422281_Wales_20200327_null_2,epi_isl_434155_Washington_20200330_null_3,epi_isl_433576_Scotland_20200402_null_2,epi_isl_434656_Stockholm_20200330_null_3,epi_isl_423389_England_20200330_null_1,epi_isl_432600_England_20200329_null_1,epi_isl_432721_England_20200402_null_4,epi_isl_434632_Occitanie_20200409_null_1,epi_isl_434980_Texas_20200331_null_1,epi_isl_415537_Wales_20200308_null_1,epi_isl_424210_Washington_20200320_null_1,epi_isl_429571_Unknown_20200326_null_1,epi_isl_419657_Austria_20200303_null_1,epi_isl_421980_England_20200331_null_1,epi_isl_432741_England_20200402_null_2,epi_isl_430593_Victoria_20200408_null_3,epi_isl_435461_Louisiana_20200403_null_1,epi_isl_419986_Victoria_20200323_null_1,epi_isl_421393_New_York_20200318_null_2,epi_isl_435534_New_York_20200420_null_2,epi_isl_434838_Texas_20200321_null_1,epi_isl_423992_England_20200321_null_1,epi_isl_430909_USA_20200408_null_1,epi_isl_432107_Wales_20200325_null_2,epi_isl_434363_Ghent_20200330_null_13,epi_isl_427480_New_York_20200401_null_1,epi_isl_421482_Portugal_20200318_null_1,epi_isl_433296_Scotland_20200323_null_1,epi_isl_435029_Texas_20200403_null_84,epi_isl_427674_New_South_Wales_20200322_null_1,epi_isl_422717_Netherlands_20200322_null_5,epi_isl_433733_England_20200405_null_4,epi_isl_435165_Kinshasa_20200413_null_7,epi_isl_424348_Mexico_City_20200313_null_1,epi_isl_423012_Washington_20200319_null_1,epi_isl_432228_Wales_20200408_null_2,epi_isl_435689_Singapore_20200418_null_9,epi_isl_418081_Washington_20200315_null_2,epi_isl_419246_Hong_Kong_20200223_null_1,epi_isl_424485_Reykjavik_20200320_null_5,epi_isl_433488_England_20200101_null_2,epi_isl_435664_California_20200316_null_2,epi_isl_414008_England_20200227_null_1,epi_isl_428349_Ile_De_France_20200323_null_2,epi_isl_433522_Scotland_20200330_null_2,epi_isl_427305_Santa_Catarina_20200310_null_1,epi_isl_435025_Texas_20200403_null_11,epi_isl_417445_Lombardy_20200224_null_1,epi_isl_427387_Liege_20200407_null_2)"
}
},
"tested":{
"0":{
"Node54":"test",
"epi_isl_406592_Guandong_20200113_null_1":"background",
"epi_isl_406799_Wuhan_20191231_null_1":"background",
"epi_isl_411929_South_Korea_20200101_null_1":"background",
"epi_isl_413870_Guangdong_20200228_null_1":"background",
"epi_isl_414008_England_20200227_null_1":"background",
"epi_isl_415537_Wales_20200308_null_1":"background",
"epi_isl_417445_Lombardy_20200224_null_1":"background",
"epi_isl_417919_Kuala_Lumpur_20200314_null_1":"background",
"epi_isl_418081_Washington_20200315_null_2":"background",
"epi_isl_418385_Finland_20200313_null_1":"background",
"epi_isl_418697_England_20200316_null_2":"background",
"epi_isl_419246_Hong_Kong_20200223_null_1":"background",
"epi_isl_419657_Austria_20200303_null_1":"background",
"epi_isl_419986_Victoria_20200323_null_1":"background",
"epi_isl_420031_Kinshasa_20200321_null_1":"background",
"epi_isl_420318_Arbre_20200307_null_1":"background",
"epi_isl_420320_Ukkel_20200309_null_1":"background",
"epi_isl_420388_Vilvoorde_20200324_null_1":"background",
"epi_isl_420498_England_20200322_null_1":"background",
"epi_isl_420701_England_20200327_null_3":"background",
"epi_isl_421177_Madrid_20200327_null_1":"background",
"epi_isl_421393_New_York_20200318_null_2":"background",
"epi_isl_421482_Portugal_20200318_null_1":"background",
"epi_isl_421731_New_York_20200318_null_1":"background",
"epi_isl_421789_England_20200325_null_1":"background",
"epi_isl_421980_England_20200331_null_1":"background",
"epi_isl_422281_Wales_20200327_null_2":"background",
"epi_isl_422656_Netherlands_20200318_null_2":"background",
"epi_isl_422717_Netherlands_20200322_null_5":"background",
"epi_isl_423012_Washington_20200319_null_1":"background",
"epi_isl_423085_England_20200325_null_1":"background",
"epi_isl_423389_England_20200330_null_1":"background",
"epi_isl_423898_England_20200318_null_1":"background",
"epi_isl_423992_England_20200321_null_1":"background",
"epi_isl_424018_England_20200312_null_8":"background",
"epi_isl_424171_Washington_20200319_null_1":"background",
"epi_isl_424210_Washington_20200320_null_1":"background",
"epi_isl_424325_Washington_20200324_null_3":"background",
"epi_isl_424348_Mexico_City_20200313_null_1":"background",
"epi_isl_424485_Reykjavik_20200320_null_5":"background",
"epi_isl_424636_Li_ge_20200403_null_1":"background",
"epi_isl_426025_New_York_20200303_null_1":"background",
"epi_isl_426028_New_York_20200304_null_2":"background",
"epi_isl_426787_Victoria_20200323_null_2":"background",
"epi_isl_426867_Victoria_20200326_null_1":"background",
"epi_isl_427082_Victoria_20200328_null_1":"background",
"epi_isl_427091_Victoria_20200403_null_2":"background",
"epi_isl_427305_Santa_Catarina_20200310_null_1":"background",
"epi_isl_427387_Liege_20200407_null_2":"background",
"epi_isl_427480_New_York_20200401_null_1":"background",
"epi_isl_427634_New_York_20200406_null_1":"background",
"epi_isl_427674_New_South_Wales_20200322_null_1":"background",
"epi_isl_428349_Ile_De_France_20200323_null_2":"background",
"epi_isl_428677_Madrid_20200311_null_1":"background",
"epi_isl_428704_Madrid_20200311_null_3":"background",
"epi_isl_428720_Ankara_20200321_null_1":"background",
"epi_isl_428729_Wisconsin_20200402_null_1":"background",
"epi_isl_428918_Novosibirsk_Region_20200327_null_5":"background",
"epi_isl_429013_California_20200328_null_2":"background",
"epi_isl_429023_California_20200331_null_2":"background",
"epi_isl_429470_Unknown_20200323_null_1":"background",
"epi_isl_429571_Unknown_20200326_null_1":"background",
"epi_isl_429694_Minas_gerais_20200318_null_1":"background",
"epi_isl_430228_Washington_20200323_null_1":"background",
"epi_isl_430482_Victoria_20200331_null_3":"background",
"epi_isl_430593_Victoria_20200408_null_3":"background",
"epi_isl_430909_USA_20200408_null_1":"background",
"epi_isl_431938_Wales_20200301_null_2":"background",
"epi_isl_432107_Wales_20200325_null_2":"background",
"epi_isl_432228_Wales_20200408_null_2":"background",
"epi_isl_432385_Wales_20200401_null_1":"background",
"epi_isl_432600_England_20200329_null_1":"background",
"epi_isl_432721_England_20200402_null_4":"background",
"epi_isl_432741_England_20200402_null_2":"background",
"epi_isl_432817_England_20200323_null_2":"background",
"epi_isl_433057_England_20200404_null_1":"background",
"epi_isl_433296_Scotland_20200323_null_1":"background",
"epi_isl_433360_Scotland_20200328_null_1":"background",
"epi_isl_433488_England_20200101_null_2":"background",
"epi_isl_433522_Scotland_20200330_null_2":"background",
"epi_isl_433576_Scotland_20200402_null_2":"background",
"epi_isl_433610_Scotland_20200404_null_9":"background",
"epi_isl_433733_England_20200405_null_4":"background",
"epi_isl_433749_England_20200406_null_2":"background",
"epi_isl_433819_England_20200327_null_3":"background",
"epi_isl_434038_England_20200414_null_2":"background",
"epi_isl_434155_Washington_20200330_null_3":"background",
"epi_isl_434248_Washington_20200401_null_1":"background",
"epi_isl_434249_Washington_20200402_null_1":"background",
"epi_isl_434329_Washington_20200325_null_3":"background",
"epi_isl_434363_Ghent_20200330_null_13":"background",
"epi_isl_434385_Antwerp_20200411_null_1":"background",
"epi_isl_434632_Occitanie_20200409_null_1":"background",
"epi_isl_434648_Skane_20200316_null_6":"background",
"epi_isl_434656_Stockholm_20200330_null_3":"background",
"epi_isl_434666_Vasterbotten_20200408_null_1":"background",
"epi_isl_434838_Texas_20200321_null_1":"background",
"epi_isl_434875_Texas_20200324_null_3":"background",
"epi_isl_434980_Texas_20200331_null_1":"background",
"epi_isl_435025_Texas_20200403_null_11":"background",
"epi_isl_435029_Texas_20200403_null_84":"background",
"epi_isl_435165_Kinshasa_20200413_null_7":"background",
"epi_isl_435399_Iowa_20200423_null_2":"background",
"epi_isl_435457_Louisiana_20200402_null_1":"background",
"epi_isl_435461_Louisiana_20200403_null_1":"background",
"epi_isl_435534_New_York_20200420_null_2":"background",
"epi_isl_435588_California_20200302_null_1":"background",
"epi_isl_435664_California_20200316_null_2":"background",
"epi_isl_435689_Singapore_20200418_null_9":"background",
"epi_isl_436107_New_Taipei_City_20200331_null_15818":"background"
}
},
"timers":{
"MEME analysis":{
"order":2,
"timer":17
},
"Model fitting":{
"order":1,
"timer":10
},
"Total time":{
"order":0,
"timer":28
}
}
}