{
"MLE":{
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"NAMES": [
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[0.5409194411567383, 1.081838882313477, 1, 0, 0.3333333333333334, 1.848704121008358, 0, -0.282514729362668, 1, 0.3333333333333334, 6.543744197617219],
[0.5406857355450332, 1.082072587925182, 0, 2, 0.3331893158241793, 0, 1.848304838619835, 0.2824537119426001, 0.4446364885310261, 1, 6.543744197617219],
[0.3973191384854949, 1.22543918498472, 0, 0, 0.2448418428912083, 0, 0, 0, 1, 1, 6.543744197617219],
[0.3244170269677156, 1.298341296502499, 0, 0, 0.1999170315601651, 0, 0, 0, 1, 1, 6.543744197617219],
[0.3244170269677156, 1.298341296502499, 0, 0, 0.1999170315601651, 0, 0, 0, 1, 1, 6.543744197617219],
[0.5407363561593248, 1.08202196731089, 1, 1, 0.3332205100035956, 1.849330063735082, 0.9241956542576153, -0.1413769214594814, 0.8889640917129435, 0.5554051117201348, 6.543744197617219],
[0.540499273787049, 1.082259049683166, 0, 1, 0.3330744116173807, 0, 0.9239931976477839, 0.141202524081586, 0.6669255883826193, 1, 6.543744197617219],
[0.07662882910744946, 0.255535437240917, 0, 0, 0.2306955830916588, 0, 0, 0, 1, 1, 8.59382848516926]
]
}
}
},
"headers": [
["ES", "Expected synonymous sites"],
["EN", "Expected non-synonymous sites"],
["S", "Inferred synonymous substitutions"],
["N", "Inferred non-synonymous substitutions"],
["P[S]", "Expected proportion of synonymous sites"],
["dS", "Inferred synonymous susbsitution rate"],
["dN", "Inferred non-synonymous susbsitution rate"],
["dN-dS", "Scaled by the length of the tested branches"],
["P [dN/dS > 1]", "Binomial probability that S is no greater than the observed value, with Ps probability of success"],
["P [dN/dS < 1]", "Binomial probability that S is no less than the observed value, with Ps probability of success"],
["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"]
]
},
"analysis":{
"authors":"Sergei L Kosakovsky Pond and Simon DW Frost",
"citation":"Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection (2005). _Mol Biol Evol_ 22 (5): 1208-1222",
"contact":"spond@temple.edu",
"info":"SLAC (Single Likelihood Ancestor Counting)\n uses a maximum likelihood ancestral state reconstruction\n and minimum path substitution counting to estimate site - level\n dS and dN,\n and applies a simple binomial - based test to test\n if dS differs drom dN.\n The estimates aggregate information over all branches,\n so the signal is derived from\n pervasive diversification or conservation. A subset of branches can be selected\n for testing as well.\n Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
"requirements":"in-frame codon alignment and a phylogenetic tree",
"version":"2.00"
},
"branch attributes":{
"0":{
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"Nucleotide GTR":0.006070919166401307,
"amino-acid": [
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],
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],
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],
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]
},
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],
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],
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],
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]
},
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],
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],
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],
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],
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],
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],
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]
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"Nucleotide GTR":0.2035154440500155,
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],
"codon": [
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],
"nonsynonymous substitution count": [
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],
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"Nucleotide GTR":1.174456253584576,
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],
"codon": [
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],
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],
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],
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],
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],
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],
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],
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],
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],
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"Nucleotide GTR":0.008775234237497605,
"amino-acid": [
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"Nucleotide GTR":0,
"amino-acid": [
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"original name":"epi_isl_414480_USA_20200221_null_1",
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]
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"Global MG94xREV":0.008986938730671969,
"Nucleotide GTR":0.008791474261989722,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
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"codon": [
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],
"original name":"epi_isl_414934_Shandong_20200121_null_1",
"synonymous substitution count": [
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]
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"epi_isl_414937_Shandong_20200126_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "L", "N", "S", "-", "-", "-", "-", "-", "-", "-", "-", "-", "G", "L", "N", "S", "C", "R", "P", "H", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
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"codon": [
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],
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],
"original name":"epi_isl_414937_Shandong_20200126_null_1",
"synonymous substitution count": [
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"epi_isl_415435_Wales_20200306_null_1":{
"Global MG94xREV":0.5360015001215493,
"Nucleotide GTR":0.5243435538982618,
"amino-acid": [
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"codon": [
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],
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"original name":"epi_isl_415435_Wales_20200306_null_1",
"synonymous substitution count": [
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]
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"epi_isl_416567_unknown_20200215_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["R", "W", "A", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
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"codon": [
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"original name":"epi_isl_416567_unknown_20200215_null_1",
"synonymous substitution count": [
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]
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"epi_isl_416604_unknown_20200216_null_1":{
"Global MG94xREV":0.01114999562441998,
"Nucleotide GTR":0.01090748501698717,
"amino-acid": [
["-", "-", "-", "-", "-", "-", "-", "A", "F", "P", "F", "-", "M", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
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"codon": [
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],
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],
"original name":"epi_isl_416604_unknown_20200216_null_1",
"synonymous substitution count": [
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]
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"epi_isl_416677_Washington_20200312_null_1":{
"Global MG94xREV":0.009025781693212749,
"Nucleotide GTR":0.008829472396356784,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "V", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
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"codon": [
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"original name":"epi_isl_416677_Washington_20200312_null_1",
"synonymous substitution count": [
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]
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"epi_isl_417222_England_20200304_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
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"codon": [
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"original name":"epi_isl_417222_England_20200304_null_1",
"synonymous substitution count": [
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]
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"epi_isl_418182_Madrid_20200312_null_3":{
"Global MG94xREV":0.03409456367149512,
"Nucleotide GTR":0.03335301240774193,
"amino-acid": [
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"codon": [
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],
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],
"original name":"epi_isl_418182_Madrid_20200312_null_3",
"synonymous substitution count": [
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]
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"epi_isl_418999_Singapore_20200301_null_4":{
"Global MG94xREV":1.146683315832376,
"Nucleotide GTR":1.121743138560329,
"amino-acid": [
["-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "K", "K", "KNTRSIM", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
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"codon": [
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],
"nonsynonymous substitution count": [
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],
"original name":"epi_isl_418999_Singapore_20200301_null_4",
"synonymous substitution count": [
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]
},
"epi_isl_419835_Northern_Territory_20200224_null_17":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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"nonsynonymous substitution count": [
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],
"original name":"epi_isl_419835_Northern_Territory_20200224_null_17",
"synonymous substitution count": [
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]
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"epi_isl_421881_England_20200326_null_4":{
"Global MG94xREV":0.009030640120775445,
"Nucleotide GTR":0.008834225153903173,
"amino-acid": [
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"codon": [
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"nonsynonymous substitution count": [
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"original name":"epi_isl_421881_England_20200326_null_4",
"synonymous substitution count": [
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]
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"epi_isl_421889_England_20200327_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
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],
"codon": [
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"nonsynonymous substitution count": [
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"original name":"epi_isl_421889_England_20200327_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_422051_Wales_20200330_null_1":{
"Global MG94xREV":0.00902579424702094,
"Nucleotide GTR":0.008829484677121668,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_422051_Wales_20200330_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_422206_Wales_20200330_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"nonsynonymous substitution count": [
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"original name":"epi_isl_422206_Wales_20200330_null_1",
"synonymous substitution count": [
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},
"epi_isl_422359_Wales_20200324_null_1":{
"Global MG94xREV":0.009034083995659824,
"Nucleotide GTR":0.008837594125063984,
"amino-acid": [
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"Nucleotide GTR":0,
"amino-acid": [
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"Nucleotide GTR":0,
"amino-acid": [
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"Global MG94xREV":0.008971707795011956,
"Nucleotide GTR":0.008776574596725057,
"amino-acid": [
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],
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"synonymous substitution count": [
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]
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"epi_isl_422985_Washington_20200317_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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],
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"synonymous substitution count": [
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"epi_isl_423187_England_20200329_null_6":{
"Global MG94xREV":0.009028051924670441,
"Nucleotide GTR":0.008831693250646226,
"amino-acid": [
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"codon": [
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],
"original name":"epi_isl_423187_England_20200329_null_6",
"synonymous substitution count": [
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]
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"epi_isl_423309_England_20200325_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"original name":"epi_isl_423309_England_20200325_null_1",
"synonymous substitution count": [
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"epi_isl_423534_England_20200331_null_3":{
"Global MG94xREV":0.002631522684825757,
"Nucleotide GTR":0.002574287490636745,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_423534_England_20200331_null_3",
"synonymous substitution count": [
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"epi_isl_423536_England_20200331_null_1":{
"Global MG94xREV":0.008971884448514713,
"Nucleotide GTR":0.008776747408042594,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_423536_England_20200331_null_1",
"synonymous substitution count": [
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"epi_isl_423770_England_20200322_null_1":{
"Global MG94xREV":0.0089821730059288,
"Nucleotide GTR":0.008786812190991469,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_423770_England_20200322_null_1",
"synonymous substitution count": [
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]
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"epi_isl_423807_England_20200324_null_2":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_423807_England_20200324_null_2",
"synonymous substitution count": [
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]
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"epi_isl_423904_England_20200318_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_423904_England_20200318_null_1",
"synonymous substitution count": [
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]
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"epi_isl_424158_England_20200321_null_1":{
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"Nucleotide GTR":0,
"amino-acid": [
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"codon": [
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"original name":"epi_isl_424158_England_20200321_null_1",
"synonymous substitution count": [
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"epi_isl_424288_Washington_20200322_null_3":{
"Global MG94xREV":0.4172208492364753,
"Nucleotide GTR":0.4081463630222947,
"amino-acid": [
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"codon": [
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"nonsynonymous substitution count": [
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"original name":"epi_isl_424288_Washington_20200322_null_3",
"synonymous substitution count": [
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"epi_isl_424315_Idaho_20200320_null_1":{
"Global MG94xREV":0.3145645600395741,
"Nucleotide GTR":0.3077228315670574,
"amino-acid": [
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"codon": [
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"nonsynonymous substitution count": [
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"original name":"epi_isl_424315_Idaho_20200320_null_1",
"synonymous substitution count": [
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"epi_isl_424366_Kayseri_20200317_null_3":{
"Global MG94xREV":0.009026112239114153,
"Nucleotide GTR":0.008829795752938132,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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],
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_424366_Kayseri_20200317_null_3",
"synonymous substitution count": [
[0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_424479_Reykjavik_20200320_null_1":{
"Global MG94xREV":1.011259321163215,
"Nucleotide GTR":0.9892645939446441,
"amino-acid": [
["-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "Y", "G", "R", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1.5, 1.5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_424479_Reykjavik_20200320_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.5, 0.5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_424600_Reykjavik_20200327_null_1":{
"Global MG94xREV":0.008969467181112242,
"Nucleotide GTR":0.008774382715816457,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "R", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_424600_Reykjavik_20200327_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_425131_Duesseldorf_20200320_null_1":{
"Global MG94xREV":0.009038361983211793,
"Nucleotide GTR":0.008841779067076326,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "Y", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_425131_Duesseldorf_20200320_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_425251_England_20200331_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_425251_England_20200331_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_426014_Scotland_20200401_null_10":{
"Global MG94xREV":0.009026013930231346,
"Nucleotide GTR":0.008829699582257659,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "S", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_426014_Scotland_20200401_null_10",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_426093_Washington_20200325_null_8":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "L", "G", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_426093_Washington_20200325_null_8",
"synonymous substitution count": [
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]
},
"epi_isl_426103_Washington_20200323_null_2":{
"Global MG94xREV":0.9672158281488032,
"Nucleotide GTR":0.9461790398034078,
"amino-acid": [
["L", "G", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[1.5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_426103_Washington_20200323_null_2",
"synonymous substitution count": [
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]
},
"epi_isl_426167_South_Korea_20200223_null_4":{
"Global MG94xREV":0.009041423891412822,
"Nucleotide GTR":0.008844774379267551,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
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],
"original name":"epi_isl_426167_South_Korea_20200223_null_4",
"synonymous substitution count": [
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]
},
"epi_isl_426899_Northern_territory_20200327_null_2":{
"Global MG94xREV":0.009026458922566075,
"Nucleotide GTR":0.00883013489608085,
"amino-acid": [
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],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0]
],
"original name":"epi_isl_426899_Northern_territory_20200327_null_2",
"synonymous substitution count": [
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]
},
"epi_isl_426949_Victoria_20200328_null_1":{
"Global MG94xREV":0.00904199493025314,
"Nucleotide GTR":0.008845332998105152,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "I", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_426949_Victoria_20200328_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_427271_Arizona_20200323_null_3":{
"Global MG94xREV":0.02745767954543875,
"Nucleotide GTR":0.02686047944155027,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "T", "D", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2.5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_427271_Arizona_20200323_null_3",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0.5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_428341_Wisconsin_20200328_null_5":{
"Global MG94xREV":0.008992545023528547,
"Nucleotide GTR":0.008796958618880399,
"amino-acid": [
["M", "G", "Y", "L", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_428341_Wisconsin_20200328_null_5",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_428685_Madrid_20200327_null_1":{
"Global MG94xREV":0.6724923558078487,
"Nucleotide GTR":0.6578657554759435,
"amino-acid": [
["-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "T", "M", "L", "G", "R", "A", "A", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 1, 0, 0, 0, 2, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_428685_Madrid_20200327_null_1",
"synonymous substitution count": [
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]
},
"epi_isl_429024_California_20200323_null_12":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
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],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_429024_California_20200323_null_12",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_429172_Bangkok_20200321_null_4":{
"Global MG94xREV":0.009025812414347153,
"Nucleotide GTR":0.008829502449311461,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "F", "T", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "---", "ACG", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CGT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "TTC", "ACA", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0]
],
"original name":"epi_isl_429172_Bangkok_20200321_null_4",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_429235_Abruzzo_20200324_null_2":{
"Global MG94xREV":0.009036635283119114,
"Nucleotide GTR":0.008840089922432312,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "L", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "---", "ACG", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CTT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_429235_Abruzzo_20200324_null_2",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_429464_Unknown_20200323_null_1":{
"Global MG94xREV":0.008984875135737454,
"Nucleotide GTR":0.008789455549912359,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "A", "N", "F", "N", "L", "T", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "---", "ACG", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CGT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GCT", "AAC", "TTT", "AAT", "CTC", "ACA", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_429464_Unknown_20200323_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_429491_Unknown_20200323_null_4":{
"Global MG94xREV":0.009026157800737131,
"Nucleotide GTR":0.008829840323603136,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "V", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "---", "ACG", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CGT", "AAC", "TAC", "ATA", "GTA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_429491_Unknown_20200323_null_4",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_429689_Minas_gerais_20200317_null_1":{
"Global MG94xREV":0.8228418463488071,
"Nucleotide GTR":0.8049451688342314,
"amino-acid": [
["-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "P", "R", "P", "R", "G", "V", "QHPRL", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-", "-"]
],
"codon": [
["---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "CCG", "AGG", "CCA", "CGC", "GGA", "GTA", "C??", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2.333333333333333, 0, 0, 1, 2, 2.25, 32.83333333333333, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_429689_Minas_gerais_20200317_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.6666666666666666, 1, 0, 0, 0, 0.75, 7.166666666666666, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_430058_Utah_20200403_null_5":{
"Global MG94xREV":0.00280730103178353,
"Nucleotide GTR":0.002746242686883955,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "---", "ACG", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CGT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTT", "ACA", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_430058_Utah_20200403_null_5",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_430180_Washington_20200315_null_1":{
"Global MG94xREV":0.008984702511585408,
"Nucleotide GTR":0.008789286680307802,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "H", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "---", "ACG", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CGT", "AAC", "CAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_430180_Washington_20200315_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_430441_Malaysia_20200229_null_11185":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "G", "Y", "I", "N", "V", "F", "A", "F", "P", "F", "-", "T", "I", "Y", "S", "L", "L", "L", "C", "R", "M", "N", "S", "R", "N", "Y", "I", "A", "Q", "V", "D", "V", "V", "N", "F", "N", "L", "T", "-"]
],
"codon": [
["ATG", "GGC", "TAT", "ATA", "AAC", "GTT", "TTC", "GCT", "TTT", "CCG", "TTT", "---", "ACG", "ATA", "TAT", "AGT", "CTA", "CTC", "TTG", "TGC", "AGA", "ATG", "AAT", "TCT", "CGT", "AAC", "TAC", "ATA", "GCA", "CAA", "GTA", "GAT", "GTA", "GTT", "AAC", "TTT", "AAT", "CTC", "ACA", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_430441_Malaysia_20200229_null_11185",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
}
},
"attributes":{
"Global MG94xREV":{
"attribute type":"branch length",
"display order":1
},
"Nucleotide GTR":{
"attribute type":"branch length",
"display order":0
},
"amino-acid":{
"attribute type":"node label",
"display order":1
},
"codon":{
"attribute type":"node label",
"display order":0
},
"nonsynonymous substitution count":{
"attribute type":"branch label",
"display order":1
},
"original name":{
"attribute type":"node label",
"display order":-1
},
"synonymous substitution count":{
"attribute type":"branch label",
"display order":0
}
}
},
"data partitions":{
"0":{
"coverage": [
[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39]
],
"name":"slac.filter.default"
}
},
"fits":{
"Global MG94xREV":{
"AIC-c":1361.972739572569,
"Equilibrium frequencies": [
[0.03110786690629411],
[0.0226173221883269],
[0.01450893388022459],
[0.03627466696344343],
[0.0163479974712255],
[0.01188599421022497],
[0.007624824135276797],
[0.01906328600332072],
[0.01558201618116663],
[0.01132907895532568],
[0.00726756492735905],
[0.0181700805552965],
[0.04634438772433109],
[0.03369520487982598],
[0.0216153572740072],
[0.05404186778183304],
[0.0135293630515415],
[0.00983667456406812],
[0.006310192677230857],
[0.01577649603556988],
[0.007110034050876722],
[0.005169429693879683],
[0.003316171251505625],
[0.008290961192267137],
[0.006776895202266119],
[0.004927217371987893],
[0.003160792885576992],
[0.007902490300889834],
[0.02015599619262272],
[0.01465464222566159],
[0.009400902251824005],
[0.02350376679334087],
[0.01768154250975705],
[0.01285556302958398],
[0.008246799176144704],
[0.02061832358591037],
[0.009292112927819842],
[0.006755934520740037],
[0.004333908605287241],
[0.01083546817461702],
[0.008856733324883638],
[0.006439386916126185],
[0.004130844412849099],
[0.01032777505162788],
[0.02634189814765551],
[0.01915217135434865],
[0.01228605161695014],
[0.03071710398432411],
[0.01948273514809469],
[0.03124727689464764],
[0.01408229065676007],
[0.01023868675705195],
[0.006568082107220803],
[0.01642126106541318],
[0.00975895567656461],
[0.006260336279968452],
[0.01565184702816377],
[0.03992141174430278],
[0.02902530843254524],
[0.01861963487075729],
[0.04655208022129214]
],
"Log Likelihood":-597.8694866694015,
"Rate Distributions":{
"non-synonymous/synonymous rate ratio for *test*": [
[0.7833959965579328, 1]
]
},
"display order":1,
"estimated parameters":80
},
"Nucleotide GTR":{
"AIC-c":1436.496651611604,
"Equilibrium frequencies": [
[0.3002379966887417],
[0.181653559602649],
[0.1597164735099338],
[0.3583919701986755]
],
"Log Likelihood":-603.2247631290817,
"Rate Distributions":{
"Substitution rate from nucleotide A to nucleotide C":0.4037914922062213,
"Substitution rate from nucleotide A to nucleotide G":1,
"Substitution rate from nucleotide A to nucleotide T":0.08121466278709803,
"Substitution rate from nucleotide C to nucleotide G":0.2943499457232464,
"Substitution rate from nucleotide C to nucleotide T":1.298885365890968,
"Substitution rate from nucleotide G to nucleotide T":0.8332113275451614
},
"display order":0,
"estimated parameters":113
}
},
"input":{
"file name":"/data/shares/veg/SARS-CoV-2/SARS-CoV-2/data/fasta/2020-04-27/sequences.ORF10.compressed.fas",
"number of sequences":54,
"number of sites":40,
"partition count":1,
"trees":{
"0":"(epi_isl_422206_Wales_20200330_null_1,epi_isl_423309_England_20200325_null_1,epi_isl_417222_England_20200304_null_1,(epi_isl_423534_England_20200331_null_3,epi_isl_423904_England_20200318_null_1)Node76,epi_isl_423536_England_20200331_null_1,epi_isl_429464_Unknown_20200323_null_1,epi_isl_424600_Reykjavik_20200327_null_1,epi_isl_426014_Scotland_20200401_null_10,epi_isl_428341_Wisconsin_20200328_null_5,epi_isl_421881_England_20200326_null_4,((epi_isl_415435_Wales_20200306_null_1,epi_isl_426093_Washington_20200325_null_8,epi_isl_424288_Washington_20200322_null_3,epi_isl_428685_Madrid_20200327_null_1)Node36,(epi_isl_414937_Shandong_20200126_null_1,(epi_isl_422425_Zhejiang_20200124_null_1,epi_isl_424315_Idaho_20200320_null_1)Node45,epi_isl_429689_Minas_gerais_20200317_null_1)Node43)Node35,epi_isl_422359_Wales_20200324_null_1,epi_isl_426949_Victoria_20200328_null_1,epi_isl_429491_Unknown_20200323_null_4,epi_isl_425131_Duesseldorf_20200320_null_1,epi_isl_430180_Washington_20200315_null_1,epi_isl_416677_Washington_20200312_null_1,epi_isl_421889_England_20200327_null_1,((epi_isl_422636_Prague_20200308_null_1,epi_isl_418999_Singapore_20200301_null_4,epi_isl_422985_Washington_20200317_null_1)Node64,epi_isl_429024_California_20200323_null_12)Node63,epi_isl_423187_England_20200329_null_6,epi_isl_423807_England_20200324_null_2,epi_isl_407073_England_20200129_null_1,epi_isl_414480_USA_20200221_null_1,epi_isl_429172_Bangkok_20200321_null_4,(epi_isl_424158_England_20200321_null_1,epi_isl_430058_Utah_20200403_null_5)Node100,epi_isl_430441_Malaysia_20200229_null_11185,epi_isl_414934_Shandong_20200121_null_1,epi_isl_424366_Kayseri_20200317_null_3,(epi_isl_419835_Northern_Territory_20200224_null_17,(epi_isl_418182_Madrid_20200312_null_3,epi_isl_416567_unknown_20200215_null_1,epi_isl_424479_Reykjavik_20200320_null_1)Node89,epi_isl_416604_unknown_20200216_null_1)Node87,epi_isl_422051_Wales_20200330_null_1,epi_isl_423770_England_20200322_null_1,epi_isl_426899_Northern_territory_20200327_null_2,epi_isl_429235_Abruzzo_20200324_null_2,epi_isl_426167_South_Korea_20200223_null_4,epi_isl_427271_Arizona_20200323_null_3,(epi_isl_425251_England_20200331_null_1,epi_isl_426103_Washington_20200323_null_2)Node15,epi_isl_422725_Netherlands_20200323_null_8)"
}
},
"tested":{
"0":{
"Node100":"test",
"Node15":"test",
"Node35":"test",
"Node36":"test",
"Node43":"test",
"Node45":"test",
"Node63":"test",
"Node64":"test",
"Node76":"test",
"Node87":"test",
"Node89":"test",
"epi_isl_407073_England_20200129_null_1":"test",
"epi_isl_414480_USA_20200221_null_1":"test",
"epi_isl_414934_Shandong_20200121_null_1":"test",
"epi_isl_414937_Shandong_20200126_null_1":"test",
"epi_isl_415435_Wales_20200306_null_1":"test",
"epi_isl_416567_unknown_20200215_null_1":"test",
"epi_isl_416604_unknown_20200216_null_1":"test",
"epi_isl_416677_Washington_20200312_null_1":"test",
"epi_isl_417222_England_20200304_null_1":"test",
"epi_isl_418182_Madrid_20200312_null_3":"test",
"epi_isl_418999_Singapore_20200301_null_4":"test",
"epi_isl_419835_Northern_Territory_20200224_null_17":"test",
"epi_isl_421881_England_20200326_null_4":"test",
"epi_isl_421889_England_20200327_null_1":"test",
"epi_isl_422051_Wales_20200330_null_1":"test",
"epi_isl_422206_Wales_20200330_null_1":"test",
"epi_isl_422359_Wales_20200324_null_1":"test",
"epi_isl_422425_Zhejiang_20200124_null_1":"test",
"epi_isl_422636_Prague_20200308_null_1":"test",
"epi_isl_422725_Netherlands_20200323_null_8":"test",
"epi_isl_422985_Washington_20200317_null_1":"test",
"epi_isl_423187_England_20200329_null_6":"test",
"epi_isl_423309_England_20200325_null_1":"test",
"epi_isl_423534_England_20200331_null_3":"test",
"epi_isl_423536_England_20200331_null_1":"test",
"epi_isl_423770_England_20200322_null_1":"test",
"epi_isl_423807_England_20200324_null_2":"test",
"epi_isl_423904_England_20200318_null_1":"test",
"epi_isl_424158_England_20200321_null_1":"test",
"epi_isl_424288_Washington_20200322_null_3":"test",
"epi_isl_424315_Idaho_20200320_null_1":"test",
"epi_isl_424366_Kayseri_20200317_null_3":"test",
"epi_isl_424479_Reykjavik_20200320_null_1":"test",
"epi_isl_424600_Reykjavik_20200327_null_1":"test",
"epi_isl_425131_Duesseldorf_20200320_null_1":"test",
"epi_isl_425251_England_20200331_null_1":"test",
"epi_isl_426014_Scotland_20200401_null_10":"test",
"epi_isl_426093_Washington_20200325_null_8":"test",
"epi_isl_426103_Washington_20200323_null_2":"test",
"epi_isl_426167_South_Korea_20200223_null_4":"test",
"epi_isl_426899_Northern_territory_20200327_null_2":"test",
"epi_isl_426949_Victoria_20200328_null_1":"test",
"epi_isl_427271_Arizona_20200323_null_3":"test",
"epi_isl_428341_Wisconsin_20200328_null_5":"test",
"epi_isl_428685_Madrid_20200327_null_1":"test",
"epi_isl_429024_California_20200323_null_12":"test",
"epi_isl_429172_Bangkok_20200321_null_4":"test",
"epi_isl_429235_Abruzzo_20200324_null_2":"test",
"epi_isl_429464_Unknown_20200323_null_1":"test",
"epi_isl_429491_Unknown_20200323_null_4":"test",
"epi_isl_429689_Minas_gerais_20200317_null_1":"test",
"epi_isl_430058_Utah_20200403_null_5":"test",
"epi_isl_430180_Washington_20200315_null_1":"test",
"epi_isl_430441_Malaysia_20200229_null_11185":"test"
}
},
"timers":{
"Model fitting":{
"order":1,
"timer":2
},
"Primary SLAC analysis":{
"order":2,
"timer":2
},
"Total time":{
"order":0,
"timer":5
}
}
}