{
"MLE":{
"content":{
"0":{
"by-branch":{
"AVERAGED": [
[40.79348349681431, 137.2936808157968, 0, 1, 0.2290647035358828, 0, 0.007283656422189399, 0.1761031837245423, 0.7709352964641172, 1, 0.005577140081723761],
[40.7934834968143, 137.2936808157968, 0, 1, 0.2290647035358827, 0, 0.007283656422189399, 0.1761031837245423, 0.7709352964641173, 1, 0.005573065112377874],
[41.19293971996118, 136.8942245926499, 0, 1, 0.2313077412342409, 0, 0.007304910071813882, 0.1766170513684409, 0.7686922587657592, 1, 0.005580163622491838],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[41.26905991258511, 136.818104400026, 1, 0, 0.2317351734577688, 0.02423122799787953, 0, -0.585859099968251, 1, 0.2317351734577687, 0.005565987484712902],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[40.30600294801558, 131.7811613645955, 1, 0, 0.2342185316901164, 0.02481020014040449, 0, -0.5998574040721968, 1, 0.2342185316901164, 0.005559247361628436],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[41.26905991258511, 136.818104400026, 1, 0, 0.2317351734577688, 0.02423122799787953, 0, -0.585859099968251, 1, 0.2317351734577687, 0.00556089546660461],
[41.62785180902702, 136.5654817848022, 0, 6, 0.2336106013029243, 0, 0.04393496747190267, 1.062253242075711, 0.2026268213663762, 1, 0.03580091585712623],
[40.79348349681431, 137.2936808157968, 0, 1, 0.2290647035358828, 0, 0.007283656422189399, 0.1761031837245423, 0.7709352964641172, 1, 0.005580118460416314],
[41.05697846941382, 136.7666908705978, 0, 1, 0.2308859029947804, 0, 0.007311721835444224, 0.1767817451970004, 0.7691140970052196, 1, 0.005573131215986315],
[41.05697846941382, 136.7666908705978, 0, 1, 0.2308859029947803, 0, 0.007311721835444223, 0.1767817451970004, 0.7691140970052197, 1, 0.005577007733673531],
[41.19293971996119, 137.2472735986378, 0, 1, 0.2308500923298751, 0, 0.007286119234137742, 0.1761627292329901, 0.7691499076701249, 1, 0.005580185043250428],
[41.05697846941382, 137.0301858431973, 1, 0, 0.2305442878372925, 0.02435639536272668, 0, -0.5888853782782552, 1, 0.2305442878372925, 0.005569215869013812],
[41.31009874464405, 136.7770655679671, 0, 1, 0.2319656158493771, 0, 0.00731116723295311, 0.1767683360987775, 0.7680343841506229, 1, 0.00555936497670197],
[41.19293971996118, 137.1411043174197, 0, 1, 0.230987526483315, 0, 0.007291759862786664, 0.1762991075306068, 0.769012473516685, 1, 0.005581517970990456],
[41.05697846941382, 137.0301858431973, 1, 0, 0.2305442878372925, 0.02435639536272668, 0, -0.5888853782782552, 1, 0.2305442878372925, 0.005572874800166067]
],
"NAMES": [
["epi_isl_416620_unknown_20200217_null_1"],
["epi_isl_418311_Derbyshire_20200325_null_1"],
["epi_isl_418210_Touba_20200310_null_6"],
["epi_isl_414010_England_20200226_null_1"],
["epi_isl_418305_South_Yorkshire_20200325_null_1"],
["Node25"],
["epi_isl_418099_Wales_20200313_null_1"],
["epi_isl_418141_Wales_20200313_null_1"],
["epi_isl_418824_British_Columbia_20201103_null_2773"],
["epi_isl_417356_Washington_20200313_null_1"],
["epi_isl_418243_Andalusia_20200228_null_18"],
["Node18"],
["epi_isl_417952_Madrid_20200309_null_1"],
["epi_isl_417368_USA_20200313_null_1"],
["epi_isl_416499_Ile_de_France_20200311_null_1"],
["epi_isl_418431_ARA_20200318_null_1"],
["epi_isl_415655_Wales_20200312_null_1"],
["epi_isl_416636_Washington_20200312_null_1"],
["epi_isl_418371_Ontario_20200307_null_1"],
["epi_isl_417378_Washington_20200314_null_7"],
["epi_isl_418750_England_20200318_null_1"]
],
"RESOLVED": [
[40.79348349681431, 137.2936808157968, 0, 1, 0.2290647035358828, 0, 0.007283656422189399, 0.1761031837245423, 0.7709352964641172, 1, 0.005577140081723761],
[40.7934834968143, 137.2936808157968, 0, 1, 0.2290647035358827, 0, 0.007283656422189399, 0.1761031837245423, 0.7709352964641173, 1, 0.005573065112377874],
[41.19293971996118, 136.8942245926499, 0, 1, 0.2313077412342409, 0, 0.007304910071813882, 0.1766170513684409, 0.7686922587657592, 1, 0.005580163622491838],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[41.26905991258511, 136.818104400026, 1, 0, 0.2317351734577688, 0.02423122799787953, 0, -0.585859099968251, 1, 0.2317351734577687, 0.005565987484712902],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[40.30600294801558, 131.7811613645955, 1, 0, 0.2342185316901164, 0.02481020014040449, 0, -0.5998574040721968, 1, 0.2342185316901164, 0.005559247361628436],
[0, 0, 0, 0, null, null, null, null, 1, 1, 0],
[41.26905991258511, 136.818104400026, 1, 0, 0.2317351734577688, 0.02423122799787953, 0, -0.585859099968251, 1, 0.2317351734577687, 0.00556089546660461],
[41.62785180902702, 136.5654817848022, 0, 6, 0.2336106013029243, 0, 0.04393496747190267, 1.062253242075711, 0.2026268213663762, 1, 0.03580091585712623],
[40.79348349681431, 137.2936808157968, 0, 1, 0.2290647035358828, 0, 0.007283656422189399, 0.1761031837245423, 0.7709352964641172, 1, 0.005580118460416314],
[41.05697846941382, 136.7666908705978, 0, 1, 0.2308859029947804, 0, 0.007311721835444224, 0.1767817451970004, 0.7691140970052196, 1, 0.005573131215986315],
[41.05697846941382, 136.7666908705978, 0, 1, 0.2308859029947803, 0, 0.007311721835444223, 0.1767817451970004, 0.7691140970052197, 1, 0.005577007733673531],
[41.19293971996119, 137.2472735986378, 0, 1, 0.2308500923298751, 0, 0.007286119234137742, 0.1761627292329901, 0.7691499076701249, 1, 0.005580185043250428],
[41.05697846941382, 137.0301858431973, 1, 0, 0.2305442878372925, 0.02435639536272668, 0, -0.5888853782782552, 1, 0.2305442878372925, 0.005569215869013812],
[41.31009874464405, 136.7770655679671, 0, 1, 0.2319656158493771, 0, 0.00731116723295311, 0.1767683360987775, 0.7680343841506229, 1, 0.00555936497670197],
[41.19293971996118, 137.1411043174197, 0, 1, 0.230987526483315, 0, 0.007291759862786664, 0.1762991075306068, 0.769012473516685, 1, 0.005581517970990456],
[41.05697846941382, 137.0301858431973, 1, 0, 0.2305442878372925, 0.02435639536272668, 0, -0.5888853782782552, 1, 0.2305442878372925, 0.005572874800166067]
]
},
"by-site":{
"AVERAGED": [
[0, 3.000000000000001, 0, 0, 0, null, 0, null, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.514087025121797, 0, 1, 0.1583510820522792, 0, 0.397758705250688, 3.494910823135556, 0.8416489179477209, 1, 0.1138108310568645],
[1, 2, 1, 0, 0.3333333333333333, 0.9999999999999998, 0, -8.78650995440284, 1, 0.3333333333333333, 0.1138108310568645],
[0.9870877985920059, 2.012912201407995, 0, 1, 0.3290292661973352, 0, 0.4967926565801124, 4.36507362231539, 0.6709707338026648, 1, 0.1138108310568645],
[0.8971729411435512, 2.10282705885645, 0, 0, 0.2990576470478502, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4833820259698821, 2.516617974030118, 1, 0, 0.1611273419899607, 2.068757103646023, 0, -18.17715488442737, 1, 0.1611273419899607, 0.1138108310568645],
[0.2010875537062446, 1.901739505150205, 0, 0, 0.09562724279171067, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.9870809030460839, 2.012919096953917, 0, 1, 0.3290269676820279, 0, 0.4967909547449109, 4.365058669123451, 0.6709730323179721, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4937594495395379, 2.506240550460463, 0, 0, 0.1645864831798459, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 1, 0, 0.3333333333333333, 0.9999999999999998, 0, -8.78650995440284, 1, 0.3333333333333333, 0.1138108310568645],
[0.2010875537062446, 2.092814434318039, 0, 0, 0.08766178971728407, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4937594495395379, 2.506240550460463, 0, 0, 0.1645864831798459, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.9792506052614366, 1.493759449539538, 0, 0, 0.395975181483945, 0, 0, 0, 1, 1, 0.1138108310568645],
[1.897172941143551, 1.10282705885645, 0, 0, 0.6323909803811836, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5875692038704093, 2.412430796129591, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5875692038704093, 2.412430796129591, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.1138108310568645],
[0, 3.000000000000001, 0, 0, 0, null, 0, null, 1, 1, 0.1138108310568645],
[0.2077537560116634, 2.792246243988337, 0, 1, 0.06925125200388781, 0, 0.3581346029752873, 3.146753254058471, 0.9307487479961122, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5062405504604623, 2, 0, 0, 0.2019920036675859, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 1, 0, 0.3333333333333333, 0.9999999999999998, 0, -8.78650995440284, 1, 0.3333333333333333, 0.1138108310568645],
[0.5875692038704093, 2.412430796129591, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.1138108310568645],
[0, 2.597824892587511, 0, 0, 0, null, 0, null, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.514078050203397, 0, 1, 0.1583515578293537, 0, 0.3977601251954357, 3.494923299494216, 0.8416484421706463, 1, 0.1138108310568645],
[0.8971729411435512, 2, 0, 0, 0.3096718626639614, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.8971729411435512, 2.10282705885645, 0, 0, 0.2990576470478502, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5061237208478199, 2.493876279152181, 0, 1, 0.1687079069492733, 0, 0.4009822012261011, 3.523234102611501, 0.8312920930507267, 1, 0.1138108310568645],
[0.8971729411435512, 2.10282705885645, 0, 0, 0.2990576470478502, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4937594495395379, 2.506240550460463, 0, 0, 0.1645864831798459, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5875692038704093, 2.412430796129591, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5062405504604623, 2, 0, 0, 0.2019920036675859, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.9792506052614366, 1.493759449539538, 0, 0, 0.395975181483945, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.9870972329659242, 2.012902767034077, 0, 1, 0.3290324109886413, 0, 0.49679498502228, 4.365094081195673, 0.6709675890113587, 1, 0.1138108310568645],
[0.2077553739500779, 2.310592667578499, 0, 1, 0.08249668851330627, 0, 0.4327893938346129, 3.802708317087798, 0.9175033114866937, 1, 0.1138108310568645],
[1, 1.897172941143551, 0, 0, 0.3451640686680193, 0, 0, 0, 1, 1, 0.1138108310568645],
[1.897172941143551, 1.10282705885645, 0, 0, 0.6323909803811836, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.2010875537062446, 2.092814434318039, 0, 0, 0.08766178971728407, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5062405504604623, 2, 0, 0, 0.2019920036675859, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2, 0, 0, 0.1912689573917004, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5062405504604623, 1.596586508395988, 0, 0, 0.240742836329947, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.9792506052614366, 1.493759449539538, 0, 0, 0.395975181483945, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5062405504604623, 1.787661437563821, 0, 0, 0.2206897038772274, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.2077537816014346, 2.103458323258421, 0, 1, 0.08988953509052001, 0, 0.4754075652190352, 4.17717330419547, 0.91011046490948, 1, 0.1138108310568645],
[0.5062405504604623, 1.596586508395988, 0, 0, 0.240742836329947, 0, 0, 0, 1, 1, 0.1138108310568645],
[1.458927762778114, 2.917855525556228, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.07800991519973827],
[0.157282551777689, 2.842717448222312, 0, 1, 0.05242751725922967, 0, 0.351776079830005, 3.090884027147147, 0.9475724827407703, 1, 0.1138108310568645],
[0.3105696396975454, 2.105521629102355, 0, 2, 0.1285421803836942, 0, 0.9498833791855458, 8.346159766735607, 0.7594387313704056, 1, 0.1138108310568645],
[0.4951548201396861, 2.504845179860315, 0, 1, 0.1650516067132287, 0, 0.3992262707652718, 3.507805602138185, 0.8349483932867714, 1, 0.1138108310568645],
[0.5093179368699153, 2.401889933295237, 1, 2, 0.1749507282147537, 1.963410136594913, 0.8326776228484917, -9.935192487799885, 0.9188864269496981, 0.4383837621648012, 0.1138108310568645],
[1.537839599740247, 6.314033454243485, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.0413601632187546],
[1.537839599740247, 6.314033454243485, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.0413601632187546]
],
"RESOLVED": [
[0, 3.000000000000001, 0, 0, 0, null, 0, null, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.514087025121797, 0, 1, 0.1583510820522792, 0, 0.397758705250688, 3.494910823135556, 0.8416489179477209, 1, 0.1138108310568645],
[1, 2, 1, 0, 0.3333333333333333, 0.9999999999999998, 0, -8.78650995440284, 1, 0.3333333333333333, 0.1138108310568645],
[0.9870877985920059, 2.012912201407995, 0, 1, 0.3290292661973352, 0, 0.4967926565801124, 4.36507362231539, 0.6709707338026648, 1, 0.1138108310568645],
[0.8971729411435512, 2.10282705885645, 0, 0, 0.2990576470478502, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4833820259698821, 2.516617974030118, 1, 0, 0.1611273419899607, 2.068757103646023, 0, -18.17715488442737, 1, 0.1611273419899607, 0.1138108310568645],
[0.2010875537062446, 1.901739505150205, 0, 0, 0.09562724279171067, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.9870809030460839, 2.012919096953917, 0, 1, 0.3290269676820279, 0, 0.4967909547449109, 4.365058669123451, 0.6709730323179721, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4937594495395379, 2.506240550460463, 0, 0, 0.1645864831798459, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 1, 0, 0.3333333333333333, 0.9999999999999998, 0, -8.78650995440284, 1, 0.3333333333333333, 0.1138108310568645],
[0.2010875537062446, 2.092814434318039, 0, 0, 0.08766178971728407, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4937594495395379, 2.506240550460463, 0, 0, 0.1645864831798459, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.9792506052614366, 1.493759449539538, 0, 0, 0.395975181483945, 0, 0, 0, 1, 1, 0.1138108310568645],
[1.897172941143551, 1.10282705885645, 0, 0, 0.6323909803811836, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5875692038704093, 2.412430796129591, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5875692038704093, 2.412430796129591, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.1138108310568645],
[0, 3.000000000000001, 0, 0, 0, null, 0, null, 1, 1, 0.1138108310568645],
[0.2077537560116634, 2.792246243988337, 0, 1, 0.06925125200388781, 0, 0.3581346029752873, 3.146753254058471, 0.9307487479961122, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5062405504604623, 2, 0, 0, 0.2019920036675859, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 1, 0, 0.3333333333333333, 0.9999999999999998, 0, -8.78650995440284, 1, 0.3333333333333333, 0.1138108310568645],
[0.5875692038704093, 2.412430796129591, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.1138108310568645],
[0, 2.597824892587511, 0, 0, 0, null, 0, null, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.514078050203397, 0, 1, 0.1583515578293537, 0, 0.3977601251954357, 3.494923299494216, 0.8416484421706463, 1, 0.1138108310568645],
[0.8971729411435512, 2, 0, 0, 0.3096718626639614, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.8971729411435512, 2.10282705885645, 0, 0, 0.2990576470478502, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5061237208478199, 2.493876279152181, 0, 1, 0.1687079069492733, 0, 0.4009822012261011, 3.523234102611501, 0.8312920930507267, 1, 0.1138108310568645],
[0.8971729411435512, 2.10282705885645, 0, 0, 0.2990576470478502, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4937594495395379, 2.506240550460463, 0, 0, 0.1645864831798459, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5875692038704093, 2.412430796129591, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5062405504604623, 2, 0, 0, 0.2019920036675859, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.9792506052614366, 1.493759449539538, 0, 0, 0.395975181483945, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.9870972329659242, 2.012902767034077, 0, 1, 0.3290324109886413, 0, 0.49679498502228, 4.365094081195673, 0.6709675890113587, 1, 0.1138108310568645],
[0.2077553739500779, 2.310592667578499, 0, 1, 0.08249668851330627, 0, 0.4327893938346129, 3.802708317087798, 0.9175033114866937, 1, 0.1138108310568645],
[1, 1.897172941143551, 0, 0, 0.3451640686680193, 0, 0, 0, 1, 1, 0.1138108310568645],
[1.897172941143551, 1.10282705885645, 0, 0, 0.6323909803811836, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.2010875537062446, 2.092814434318039, 0, 0, 0.08766178971728407, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5062405504604623, 2, 0, 0, 0.2019920036675859, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2, 0, 0, 0.1912689573917004, 0, 0, 0, 1, 1, 0.1138108310568645],
[1, 2, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5062405504604623, 1.596586508395988, 0, 0, 0.240742836329947, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.9792506052614366, 1.493759449539538, 0, 0, 0.395975181483945, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.4730100548009742, 2.526989945199027, 0, 0, 0.1576700182669914, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.5062405504604623, 1.787661437563821, 0, 0, 0.2206897038772274, 0, 0, 0, 1, 1, 0.1138108310568645],
[0.2077537816014346, 2.103458323258421, 0, 1, 0.08988953509052001, 0, 0.4754075652190352, 4.17717330419547, 0.91011046490948, 1, 0.1138108310568645],
[0.5062405504604623, 1.596586508395988, 0, 0, 0.240742836329947, 0, 0, 0, 1, 1, 0.1138108310568645],
[1.458927762778114, 2.917855525556228, 0, 0, 0.3333333333333333, 0, 0, 0, 1, 1, 0.07800991519973827],
[0.157282551777689, 2.842717448222312, 0, 1, 0.05242751725922967, 0, 0.351776079830005, 3.090884027147147, 0.9475724827407703, 1, 0.1138108310568645],
[0.3105696396975454, 2.105521629102355, 0, 2, 0.1285421803836942, 0, 0.9498833791855458, 8.346159766735607, 0.7594387313704056, 1, 0.1138108310568645],
[0.4951548201396861, 2.504845179860315, 0, 1, 0.1650516067132287, 0, 0.3992262707652718, 3.507805602138185, 0.8349483932867714, 1, 0.1138108310568645],
[0.5093179368699153, 2.401889933295237, 1, 2, 0.1749507282147537, 1.963410136594913, 0.8326776228484917, -9.935192487799885, 0.9188864269496981, 0.4383837621648012, 0.1138108310568645],
[1.537839599740247, 6.314033454243485, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.0413601632187546],
[1.537839599740247, 6.314033454243485, 0, 0, 0.1958564012901364, 0, 0, 0, 1, 1, 0.0413601632187546]
]
}
}
},
"headers": [
["ES", "Expected synonymous sites"],
["EN", "Expected non-synonymous sites"],
["S", "Inferred synonymous substitutions"],
["N", "Inferred non-synonymous substitutions"],
["P[S]", "Expected proportion of synonymous sites"],
["dS", "Inferred synonymous susbsitution rate"],
["dN", "Inferred non-synonymous susbsitution rate"],
["dN-dS", "Scaled by the length of the tested branches"],
["P [dN/dS > 1]", "Binomial probability that S is no greater than the observed value, with Ps probability of success"],
["P [dN/dS < 1]", "Binomial probability that S is no less than the observed value, with Ps probability of success"],
["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"]
]
},
"analysis":{
"authors":"Sergei L Kosakovsky Pond and Simon DW Frost",
"citation":"Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection (2005). _Mol Biol Evol_ 22 (5): 1208-1222",
"contact":"spond@temple.edu",
"info":"SLAC (Single Likelihood Ancestor Counting)\n uses a maximum likelihood ancestral state reconstruction\n and minimum path substitution counting to estimate site - level\n dS and dN,\n and applies a simple binomial - based test to test\n if dS differs drom dN.\n The estimates aggregate information over all branches,\n so the signal is derived from\n pervasive diversification or conservation. A subset of branches can be selected\n for testing as well.\n Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
"requirements":"in-frame codon alignment and a phylogenetic tree",
"version":"2.00"
},
"branch attributes":{
"0":{
"Node18":{
"Global MG94xREV":0.00556089546660461,
"Nucleotide GTR":0.005468374208309172,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAC", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0]
]
},
"Node21":{
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "I", "I"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "ATT", "ATT"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"Node25":{
"Global MG94xREV":0.005565987484712902,
"Nucleotide GTR":0.00547338150626305,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTC", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_414010_England_20200226_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "LF", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTN", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_414010_England_20200226_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_415655_Wales_20200312_null_1":{
"Global MG94xREV":0.005580185043250428,
"Nucleotide GTR":0.005487342848171694,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "D", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAT", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_415655_Wales_20200312_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_416499_Ile_de_France_20200311_null_1":{
"Global MG94xREV":0.005573131215986315,
"Nucleotide GTR":0.005480406381318016,
"amino-acid": [
["M", "F", "Y", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "TAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_416499_Ile_de_France_20200311_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_416620_unknown_20200217_null_1":{
"Global MG94xREV":0.005577140081723761,
"Nucleotide GTR":0.005484348548210896,
"amino-acid": [
["M", "F", "H", "L", "F", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "TTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_416620_unknown_20200217_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_416636_Washington_20200312_null_1":{
"Global MG94xREV":0.005569215869013812,
"Nucleotide GTR":0.005476556177240343,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCT", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_416636_Washington_20200312_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_417356_Washington_20200313_null_1":{
"Global MG94xREV":0.005559247361628436,
"Nucleotide GTR":0.00546675352423079,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCT", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAC", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_417356_Washington_20200313_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_417368_USA_20200313_null_1":{
"Global MG94xREV":0.005580118460416314,
"Nucleotide GTR":0.00548727737313176,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "F", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "TTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_417368_USA_20200313_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_417378_Washington_20200314_null_7":{
"Global MG94xREV":0.005581517970990456,
"Nucleotide GTR":0.005488653598880636,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "N", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAT", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_417378_Washington_20200314_null_7",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_417952_Madrid_20200309_null_1":{
"Global MG94xREV":0.03580091585712623,
"Nucleotide GTR":0.0352052661451109,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "-", "T", "N", "M", "K", "I", "I"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "---", "ACG", "AAC", "ATG", "AAA", "ATT", "ATT"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 2, 1, 2, 0, 0]
],
"original name":"epi_isl_417952_Madrid_20200309_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_418099_Wales_20200313_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "HPRL", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CNT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_418099_Wales_20200313_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_418141_Wales_20200313_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "TPAS", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "NCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_418141_Wales_20200313_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_418210_Touba_20200310_null_6":{
"Global MG94xREV":0.005580163622491838,
"Nucleotide GTR":0.005487321783808152,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "S", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGT", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_418210_Touba_20200310_null_6",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_418243_Andalusia_20200228_null_18":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAC", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_418243_Andalusia_20200228_null_18",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_418305_South_Yorkshire_20200325_null_1":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTC", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_418305_South_Yorkshire_20200325_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_418311_Derbyshire_20200325_null_1":{
"Global MG94xREV":0.005573065112377874,
"Nucleotide GTR":0.005480341377530472,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "F", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TTT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_418311_Derbyshire_20200325_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_418371_Ontario_20200307_null_1":{
"Global MG94xREV":0.00555936497670197,
"Nucleotide GTR":0.005466869182444195,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "T", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ACA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_418371_Ontario_20200307_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_418431_ARA_20200318_null_1":{
"Global MG94xREV":0.005577007733673531,
"Nucleotide GTR":0.005484218402145616,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "Y", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "TAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_418431_ARA_20200318_null_1",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_418750_England_20200318_null_1":{
"Global MG94xREV":0.005572874800166067,
"Nucleotide GTR":0.005480154231701749,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTT", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_418750_England_20200318_null_1",
"synonymous substitution count": [
[0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
},
"epi_isl_418824_British_Columbia_20201103_null_2773":{
"Global MG94xREV":0,
"Nucleotide GTR":0,
"amino-acid": [
["M", "F", "H", "L", "V", "D", "F", "Q", "V", "T", "I", "A", "E", "I", "L", "L", "I", "I", "M", "R", "T", "F", "K", "V", "S", "I", "W", "N", "L", "D", "Y", "I", "I", "N", "L", "I", "I", "K", "N", "L", "S", "K", "S", "L", "T", "E", "N", "K", "Y", "S", "Q", "L", "D", "E", "E", "Q", "P", "M", "E", "I", "D", "-", "-"]
],
"codon": [
["ATG", "TTT", "CAT", "CTC", "GTT", "GAC", "TTT", "CAG", "GTT", "ACT", "ATA", "GCA", "GAG", "ATA", "TTA", "CTA", "ATT", "ATT", "ATG", "AGG", "ACT", "TTT", "AAA", "GTT", "TCC", "ATT", "TGG", "AAT", "CTT", "GAT", "TAC", "ATC", "ATA", "AAC", "CTC", "ATA", "ATT", "AAA", "AAT", "TTA", "TCT", "AAG", "TCA", "CTA", "ACT", "GAG", "AAT", "AAA", "TAT", "TCT", "CAA", "TTA", "GAT", "GAA", "GAG", "CAA", "CCA", "ATG", "GAG", "ATT", "GAT", "---", "---"]
],
"nonsynonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
],
"original name":"epi_isl_418824_British_Columbia_20201103_null_2773",
"synonymous substitution count": [
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
]
}
},
"attributes":{
"Global MG94xREV":{
"attribute type":"branch length",
"display order":1
},
"Nucleotide GTR":{
"attribute type":"branch length",
"display order":0
},
"amino-acid":{
"attribute type":"node label",
"display order":1
},
"codon":{
"attribute type":"node label",
"display order":0
},
"nonsynonymous substitution count":{
"attribute type":"branch label",
"display order":1
},
"original name":{
"attribute type":"node label",
"display order":-1
},
"synonymous substitution count":{
"attribute type":"branch label",
"display order":0
}
}
},
"data partitions":{
"0":{
"coverage": [
[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62]
],
"name":"slac.filter.default"
}
},
"fits":{
"Global MG94xREV":{
"AIC-c":773.4819678235558,
"Equilibrium frequencies": [
[0.05302950207893566],
[0.01859763661646499],
[0.03175634959564656],
[0.06563076007919795],
[0.01805605730173882],
[0.006332324069797256],
[0.01081274470839899],
[0.02234666965159737],
[0.004402140797132986],
[0.001543846569740185],
[0.002636191490444769],
[0.005448209678858124],
[0.05413978058341175],
[0.01898701527098418],
[0.03242123217900916],
[0.06700487107952179],
[0.02083082498971124],
[0.007305445052136593],
[0.01247439509717301],
[0.02578079792483202],
[0.007092704153564404],
[0.002487436790934511],
[0.00424741669917649],
[0.008778124371645225],
[0.001729230351600271],
[0.0006064472877258682],
[0.001035537604993541],
[0.002140142710723757],
[0.02126695990159771],
[0.007458399130320186],
[0.01273557146485071],
[0.02632057040320784],
[0.02669312534676188],
[0.009361374817698312],
[0.01598499301483915],
[0.03303614095394593],
[0.009088763460501704],
[0.003187461950515981],
[0.005442742973792287],
[0.01124850188494812],
[0.002215877794157926],
[0.0007771162916238762],
[0.001326963051392875],
[0.002742430876622708],
[0.02725199922126444],
[0.009557373890383606],
[0.01631967075916643],
[0.0337278185246199],
[0.0124346342990143],
[0.04388162416447385],
[0.01207252695917261],
[0.004233878513416273],
[0.007229549054556163],
[0.01494128908145708],
[0.001032236939800787],
[0.001762593699504435],
[0.003642747534972973],
[0.03619859805130245],
[0.01269497819499633],
[0.02167727942982268],
[0.04480037358020082]
],
"Log Likelihood":-349.592708049709,
"Rate Distributions":{
"non-synonymous/synonymous rate ratio for *test*": [
[0.966521049357593, 1]
]
},
"display order":1,
"estimated parameters":36
},
"Nucleotide GTR":{
"AIC-c":813.7199182729537,
"Equilibrium frequencies": [
[0.3614224137931035],
[0.1421695402298851],
[0.1395833333333333],
[0.3568247126436782]
],
"Log Likelihood":-363.3265506222394,
"Rate Distributions":{
"Substitution rate from nucleotide A to nucleotide C":0,
"Substitution rate from nucleotide A to nucleotide G":1,
"Substitution rate from nucleotide A to nucleotide T":0.3815374133947927,
"Substitution rate from nucleotide C to nucleotide G":1.173380467160317,
"Substitution rate from nucleotide C to nucleotide T":4.004849939039762,
"Substitution rate from nucleotide G to nucleotide T":3.556640382861116
},
"display order":0,
"estimated parameters":43
}
},
"input":{
"file name":"/data/shares/veg/SARS-CoV-2/SARS-CoV-2/data/fasta/2020-03-31/sequences.ORF6.compressed.fas",
"number of sequences":19,
"number of sites":63,
"partition count":1,
"trees":{
"0":"(epi_isl_416620_unknown_20200217_null_1,epi_isl_418311_Derbyshire_20200325_null_1,epi_isl_418210_Touba_20200310_null_6,(epi_isl_414010_England_20200226_null_1,epi_isl_418305_South_Yorkshire_20200325_null_1)Node25,epi_isl_418099_Wales_20200313_null_1,epi_isl_418141_Wales_20200313_null_1,epi_isl_418824_British_Columbia_20201103_null_2773,(epi_isl_417356_Washington_20200313_null_1,epi_isl_418243_Andalusia_20200228_null_18)Node18,epi_isl_417952_Madrid_20200309_null_1,epi_isl_417368_USA_20200313_null_1,epi_isl_416499_Ile_de_France_20200311_null_1,epi_isl_418431_ARA_20200318_null_1,epi_isl_415655_Wales_20200312_null_1,epi_isl_416636_Washington_20200312_null_1,epi_isl_418371_Ontario_20200307_null_1,epi_isl_417378_Washington_20200314_null_7,epi_isl_418750_England_20200318_null_1)"
}
},
"tested":{
"0":{
"Node18":"test",
"Node25":"test",
"epi_isl_414010_England_20200226_null_1":"test",
"epi_isl_415655_Wales_20200312_null_1":"test",
"epi_isl_416499_Ile_de_France_20200311_null_1":"test",
"epi_isl_416620_unknown_20200217_null_1":"test",
"epi_isl_416636_Washington_20200312_null_1":"test",
"epi_isl_417356_Washington_20200313_null_1":"test",
"epi_isl_417368_USA_20200313_null_1":"test",
"epi_isl_417378_Washington_20200314_null_7":"test",
"epi_isl_417952_Madrid_20200309_null_1":"test",
"epi_isl_418099_Wales_20200313_null_1":"test",
"epi_isl_418141_Wales_20200313_null_1":"test",
"epi_isl_418210_Touba_20200310_null_6":"test",
"epi_isl_418243_Andalusia_20200228_null_18":"test",
"epi_isl_418305_South_Yorkshire_20200325_null_1":"test",
"epi_isl_418311_Derbyshire_20200325_null_1":"test",
"epi_isl_418371_Ontario_20200307_null_1":"test",
"epi_isl_418431_ARA_20200318_null_1":"test",
"epi_isl_418750_England_20200318_null_1":"test",
"epi_isl_418824_British_Columbia_20201103_null_2773":"test"
}
},
"timers":{
"Model fitting":{
"order":1,
"timer":0
},
"Primary SLAC analysis":{
"order":2,
"timer":1
},
"Total time":{
"order":0,
"timer":1
}
}
}