These five datasets were used to evaluate the performance of Contrast-FEL
For each dataset, we provide a multiple sequence alignment (from the original paper) as FASTA or NEXUS; an annotated phylogeny, using the {} annotation in the Newick string (see http://hyphy.org/tutorials/phylotree/); and the contrast-FEL output JSON file, which can be read for further processing, or viewed at http://vision.hyphy.org/Contrast-FEL
| Dataset | Reference | Files | |
|---|---|---|---|
| HIV-1 reverse transcriptase | Murrell et al | MSA JSON | |
| HIV-1 envelope | Tully et al | MSA JSON | |
| Rubisco (C3 vs C4) | Parto et al | MSA JSON | |
| cytochrome B of Haemosporidians | Pacheco et al | MSA JSON | Uses Invertebrate Mitochondrial Code |
| Epidermal leaf trichomes, BRT | Mazie and Baum | MSA JSON |